PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7qixF_

Fold library id	PDB Header	Molecule	Title
c7qixF_	2.53	PDB header: ribosome	Chain: F: PDB Molecule: 40s ribosomal protein s3a;

Links to external resources
Added to library: Wed Jun 22 04:01:40 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D P Y A K K D W Y D I K A P S V F E V R N V G K T L V T R T Q G T K I A S E G L K H R V F E V S L A D L Q N D E D H S F R K I R L R A E D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T S S
B T T B
T T
T T
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q G R N V L T N F H G M D F T T D K L R S L V K K W Q S L I E A H V D V K T T D S Y T L R M F C I A F T K K R P N Q Q K R T C Y A Q S S Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T B
T T S
T T
S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R Q I R R K M V E I M R N Q A Q S C D L K D L V L K F I P E S I G R E I E K A T S S I F P L Q N V F I R K V K I L K A P K F D L G R L M E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T S T T T
G G G

. . . . .

Sequence H G D Y S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	P	Y	A	K	K	D	W	Y	D	I	K	A	P	S	V	F	E	V	R	N	V	G	K	T	L	V	T	R	T	Q	G	T	K	I	A	S	E	G	L	K	H	R	V	F	E	V	S	L	A	D	L	Q	N	D	E	D	H	S	F	R	K	I	R	L	R	A	E	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G										T	T	S	S													B	T	T	B							T	T											T	T		G	G	G	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	G	R	N	V	L	T	N	F	H	G	M	D	F	T	T	D	K	L	R	S	L	V	K	K	W	Q	S	L	I	E	A	H	V	D	V	K	T	T	D	S	Y	T	L	R	M	F	C	I	A	F	T	K	K	R	P	N	Q	Q	K	R	T	C	Y	A	Q	S	S	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																						T	T	B												T	T	S															T	T			S	S		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	Q	I	R	R	K	M	V	E	I	M	R	N	Q	A	Q	S	C	D	L	K	D	L	V	L	K	F	I	P	E	S	I	G	R	E	I	E	K	A	T	S	S	I	F	P	L	Q	N	V	F	I	R	K	V	K	I	L	K	A	P	K	F	D	L	G	R	L	M	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S										T	T	T										S	T	T	T																									G	G	G
	.	.	.	.	.
Sequence	H	G	D	Y	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)