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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7qdrA_

Fold library idPDB HeaderMoleculeTitle
c7qdrA_3.70PDB header: rna binding proteinChain: A: PDB Molecule: helicase ski2w;


Added to library: Sat Feb 5 09:23:59 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MMETERLVLPPPDPLDLPLRAVELGCTGHWELLNLPGAPESSLPHGLPPCAPDLQQEAEQLFLSSPAWLP
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Known secondary structure (DSSP)








SS

SSS



SSSS
SS




BSSTT
S


S

S
GGGSG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LHGVEHSARKWQRKTDPWSLLAVLGAPVPSDLQAQRHPTTGQILGYKEVLLENTNLSATTSLSLRRPPGP
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Known secondary structure (DSSP) GGSSSS









GGGG














SSS








SS
S

TTT

STTS


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ASQSLWGNPTQYPFWPGGMDEPTITDLNTREEAEEEIDFEKDLLTIPPGFKKGMDFAPKDCAPGLLLARA
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Known secondary structure (DSSP) SS

SS


S





SS











SS





SSSS




TT
S
















 .........220.........230.........240.........250.........260.........270.........280
Sequence SSLEDLVLKEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVV
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Known secondary structure (DSSP)






SSSS


SSSS

S
S


SS


TT

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence AEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGS
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Known secondary structure (DSSP) TT

S
TTSS



SS

TTSSS

S
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence DVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV
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Known secondary structure (DSSP) TTGGG

GGGTT
SSSS
TT

B


S
TTTTTTS


 .........430.........440.........450.........460.........470.........480.........490
Sequence TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMGPAQDRGVYLSLLASLRTRAQL
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Known secondary structure (DSSP)

SS




TTT


SB
TT

B


TTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence PVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHS
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Known secondary structure (DSSP)

SS






TTS
SGGGSST
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence GILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRR
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Known secondary structure (DSSP) TS
TTT








S


SB

SSSS

B

TT

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence GLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRK
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Known secondary structure (DSSP) SSSS



SS


SS











SSSS

T
GGGT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DSKAHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETQHMIQRRIMESVNGLKSLSAGRVVVV
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Known secondary structure (DSSP) TT
S




SSTTTTSS
SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence KNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPLSQDPQDRGPATAEVPYPDDLVGFKLFLPEGPCDHTV
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Known secondary structure (DSSP) SSS




S

SS










GGG









SS





SS



 .........850.........860.........870.........880.........890.........900.........910
Sequence VKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPLAAVTTAVQELLRLAQAHPAGPPTLDPVND
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Known secondary structure (DSSP)
STT



TSTTTTTS


TSSS


B

TTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LQLKDMSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQ
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Known secondary structure (DSSP) TT


TT
SGGGSTTTSSTT
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RVEVLRTLGYVDEAGTVKLAGRVACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQL
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Known secondary structure (DSSP) TTTB
TTS
B
S
SS
TTSGGGS
GGGT

S




SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVV
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Known secondary structure (DSSP)
TTT



TT


SSTTT

SSS
 .........1130.........1140.........1150.........1160.........
Sequence RCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
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Known secondary structure (DSSP) TTTTTTST
TTTT

SGGG


STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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