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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7q5bC_

Fold library idPDB HeaderMoleculeTitle
c7q5bC_3.98PDB header: dna binding proteinChain: C: PDB Molecule: transposon ty3-g gag-pol polyprotein;


Added to library: Sat Jan 29 09:00:10 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNA
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SS

SSSSTTTS






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TT


TTTSB


TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRAEGRWLDISMDFVT
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TTTT




SSSB

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SSS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQE
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TTTT



TTT





S
SSTTTSSSTTS


S


S


STTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFE
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Known secondary structure (DSSP) S








S


SSSTS
TTTTTTSSS

SSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAEMETNNNQRRKPLLLNIGDHVLVH
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TTS
S
TTT




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TTT





TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFVYRPDAYPKNKPISST
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Known secondary structure (DSSP) S
SS




TT

SSS
S
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SS
STTS
S
GGG




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S



S
 .........430.........440.........450.........460.........470.........480..
Sequence ERIKRAHEVTALIGIDTTHKTYLCHMQDVDPTLSVEYSEAEFCQIPERTRRSILANFRQLYE
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Known secondary structure (DSSP) TTT

SSSS
TTS
TTS

TTSTTSS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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