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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7pykF_

Fold library idPDB HeaderMoleculeTitle
c7pykF_4.10PDB header: transcriptionChain: F: PDB Molecule: transcription termination/antitermination protein nusa;


Added to library: Tue Jun 21 19:54:42 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQ
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Known secondary structure (DSSP)


TS
TTTTTS
TTSSS


B





SSS






B
SS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG
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Known secondary structure (DSSP) GGG


GGGSGGGTT


SSB








STTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence VVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFR
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Known secondary structure (DSSP)

S

TTS

STTS
TTTS
SSS
S
TT








TTS



TTSGGGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence IEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP
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Known secondary structure (DSSP) TSSTT




S





B
TTS
B

B


TTT
S


TTSSSSSSTTTTTT





B


SST
 .........290.........300.........310.........320.........330.........340.........350
Sequence AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA
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Known secondary structure (DSSP) TTTSS


S
TTTT


SSS

SSSSSSS

B



STTSS
TTGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA
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Known secondary structure (DSSP) GGTTTT

SSTTSSSTTTSTTTTSSTTTS
S
SGGGSSS
STTTGGGTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICW
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Known secondary structure (DSSP) GGGTTSS


TTSTT
SSS
T
GGGS

STT

TTTS
SSSS

SSTTT
 .....
Sequence FGDEA
Predicted secondary structure




SS confidence




Known secondary structure (DSSP) TS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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