Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7py7C_

Fold library idPDB HeaderMoleculeTitle
c7py7C_4.10PDB header: transcriptionChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;


Added to library: Wed Jun 22 00:22:53 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)


TTGGGS

B



S

SS



TTTTSS

GGGSSS
S
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)


SS
T



TT
TTSS


TTS
SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILR
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)

S

TTTTTTSS




SBS


TTS
STT


 .........220.........230.........240.........250.........260.........270.........280
Sequence ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TT

S


SSS


SGGGTT
B
SS
TT
TTSB

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)




STTTTT
BBSS
TTTT
SS
B

TTT




SSS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)
S

SSSS



S
TTT
B

TT


S


SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TSSS



SSSGGG
TT

SS


TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) S


S
SS


SSS
S
STTS

SSS

STTTS

GGGTTTB
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)



SS

SSS

B
SS



SS



SSSB
STTGGGS

TT

B
TTSBBSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) SSSS

TTT


S
SGGGS
T
TTGGGS
SB


SS



S
 .........710.........720.........730.........740.........750.........760.........770
Sequence TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)
S
STTS
B
SS

SS
TTT

TTT





S
TTS




 .........780.........790.........800.........810.........820.........830.........840
Sequence SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
TT

SSSBS
TTTT

SS

TTTTSSS
TTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) TT
B
SS


S

TB
TTSBB
SS



TT









TT


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA
Predicted secondary structure























































SS confidence





































































Known secondary structure (DSSP)




TT



TTS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK
Predicted secondary structure
































































SS confidence





































































Known secondary structure (DSSP)

TTS
T





STTS




TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)


TT
SSS

TTTS
TTS
B


TTSS
T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK
Predicted secondary structure























































SS confidence





































































Known secondary structure (DSSP) S



SS

S



STTS
TTTT




SSS


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TTS
TTS

SSS

B
SS
BS





SS

B
TTT

B


 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TTTT





SS

TSSS
TT








 .........1340.
Sequence SLGINIELEDE
Predicted secondary structure




SS confidence










Known secondary structure (DSSP) TT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D