PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7pwfB_

Fold library id	PDB Header	Molecule	Title
c7pwfB_	2.85	PDB header: ribosome	Chain: B: PDB Molecule: 40s ribosomal protein s3a;

Links to external resources
Added to library: Wed Jun 22 01:20:25 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N P D P Y L K K E W Y P V I A P A H F K S R H I G Q T P V T K T A G L R V A T D V I N H R V Y E V N L G D L N P G A E D L N G N T K F Y L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T
S
B T T B
S T T
S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T Q L V S D G K C L T N F H G M D I T R H K Y G S L F R K G C D C I D V F M D I P T T D G Y L L R V F V I A F T D R F R F Q R R K N C H V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
S S S
T T S
B
T T
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R V I R M M R A G I Y E T L H N E L G K V S I P V L V T K L S N F E V N A K L T E A L Q K I T M C R D V M I R R V K V V K R P R N T M E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T T T T T T S
B S
S

. . . . . . . .

Sequence L S T M H D S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	P	D	P	Y	L	K	K	E	W	Y	P	V	I	A	P	A	H	F	K	S	R	H	I	G	Q	T	P	V	T	K	T	A	G	L	R	V	A	T	D	V	I	N	H	R	V	Y	E	V	N	L	G	D	L	N	P	G	A	E	D	L	N	G	N	T	K	F	Y	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	G										T	T		S													B	T	T	B						S	T	T											S		S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	Q	L	V	S	D	G	K	C	L	T	N	F	H	G	M	D	I	T	R	H	K	Y	G	S	L	F	R	K	G	C	D	C	I	D	V	F	M	D	I	P	T	T	D	G	Y	L	L	R	V	F	V	I	A	F	T	D	R	F	R	F	Q	R	R	K	N	C	H	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																			T			S	S	S												T	T	S											B				T	T		S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	V	I	R	M	M	R	A	G	I	Y	E	T	L	H	N	E	L	G	K	V	S	I	P	V	L	V	T	K	L	S	N	F	E	V	N	A	K	L	T	E	A	L	Q	K	I	T	M	C	R	D	V	M	I	R	R	V	K	V	V	K	R	P	R	N	T	M	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S	S											T	T	T	T	T										T	T	S		B	S														S
	.	.	.	.	.	.	.	.
Sequence	L	S	T	M	H	D	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S