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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7pw5B_

Fold library idPDB HeaderMoleculeTitle
c7pw5B_3.40PDB header: transferaseChain: B: PDB Molecule: protein smg8;


Added to library: Sat Dec 4 08:36:35 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PVSLRDLLMGEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDRQVFPLFRQDYSLLQAYYSQESKVL
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Known secondary structure (DSSP)
S


GGGSS



B
S
SS
TS
SS
S





TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YLLLTSICDNSQLLRACRALQSGPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVF
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Known secondary structure (DSSP)
TTB

TTS
S
SSSS

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence RALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALSPKRRLQHALEDQIYRIFRKSR
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Known secondary structure (DSSP) TSS
TT
SSSSS


TT


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCTFTLREFLWQHVELVLSKKGFDDSVGR
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Known secondary structure (DSSP) SS
SSTTTSS
B

SSS




SSSS


TT






SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPQPSHFELPTYQKWISAASKLYEVSKILSSIKVLFLDIDTKFSENRCQKALPMAHSAYVHKNQLAQALR
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Known secondary structure (DSSP) S












TT

TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNS
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Known secondary structure (DSSP)


SSTTSSTTS
B


B
TTS
B

SBS
B


TT


BTTSSS
B




 .........430.........440.........450.........460.........470.........480.........490
Sequence RARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNRQASTVEY
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Known secondary structure (DSSP)


TTSS


SSTTTTTTTS






SSSS







SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRRDDIARAFVGF
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Known secondary structure (DSSP) BSS

BTTS
TT

BSS
S

GGGSBTTTB


TTB
TT







GGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence EYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRLFVVVPDAPL
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Known secondary structure (DSSP) TB

TT



SSS

S
TS
S
S


SSSS


SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYKVLRGVLKAV
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Known secondary structure (DSSP)


SSTTS

B

SSS

SS

SSTT



TT

GGG
S
S
 ..
Sequence TQ
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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