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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7pl9D_

Fold library idPDB HeaderMoleculeTitle
c7pl9D_3.21PDB header: membrane proteinChain: D: PDB Molecule: rhodopsin;


Added to library: Sat Jul 9 09:02:56 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDLNFAQVARDEGRRCLLMCVAFAIAIAHLYIYPALFGVRIVDQAEVPAEERTYFHHGWTAMLVIFFIEG
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Known secondary structure (DSSP)



SSSS




SS

STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VTVFLKVCSTRKTRWLEKAVLQKLDGNIGVLIGEYIVVAATYIIMGANLIPVFERSGRRVYAVRYMEWTI
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Known secondary structure (DSSP) STT
TSST







S



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DACGLVYLDCRILFGMPFSKFRMLLVYSVLYMLFGLWAALASTWMWYAIFLSASWFFFGLVCYYYWTFHR
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Known secondary structure (DSSP) T

SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QNPSPLQQFGRAPIKQAILVFVIVWWVLYGVLFMLCFQAPDVVPQWLEQLLWTGMDVVMKLSHTVVLMAW
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Known secondary structure (DSSP)




TTSSS

TTT
SSS
TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence RETQWEIDAVVDRQKVEAGRAIAQLDHQRAIHERDLVRLRSRVYYFARVNKIFMREAGLCLVLCLAFVVA
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Known secondary structure (DSSP) S

TTS



 .........360.........370.........380.........390.........400.........410.........420
Sequence LLHLPVYSEWFGVEVLDAEAVPHDELGFFHHGWTTMLVVFLIESITVLLKVWSTWHDPRLAENVAQQLSG
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Known secondary structure (DSSP) TGGGSSSS
SS


TTS
TTTTTTSS
TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence NLGVLIAEYLVVGATYVILGYNLMPVFVVHRPGVASRRVYAVRYMEWAVDATGLIWLDCHCLFSRNFNEF
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Known secondary structure (DSSP) TS

S




SS




STTTSS


STTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence RMAIVWTVAYMLFGLWSALASTWAWYWAFLLASWAAFLIVCLILVRFLRQDPYPHQPFGKTSVKPCILAF
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Known secondary structure (DSSP)
TTSSST
S
SSTTTTS
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence IIGWWVLYGILFMVCFQAPDAVPQWLEQFLWTGMDVVMKLSHTVVLMAWRTTEWNVCELHGRNSTNWTAT
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Known secondary structure (DSSP)
TTT

SSTSTTTS
SSS







S
 .........640.........650.........660.........670.........680.........690.........700
Sequence PGLRVDLSSMVRLEGQLAQGLVTDVHRKGMMRSEDLAELKRLEESGFLQAQQHRNWESQTREMTFLAHGI
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Known secondary structure (DSSP) TT



S
TTSS
SS
TSSS









T
 .........710.........720.........730.........740.........750.........760.........770
Sequence NHIAYDPRSWMKTLTAVRGRAPTSFLLWVVLIESSIVLALSKFFGESFDLGVSSGIHSLFGVLVSFLVVF
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Known secondary structure (DSSP) TS



TT
SS

TTS



TTTTTT




 .........780.........790.........800.........810.........820.........830.........840
Sequence RTQAAFKKWWSGRSAVSSLVQMSRTFAQQVCAYVKDEAYVNRMVRYSIATVVATRCHLRNTRIDPAMLLG
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Known secondary structure (DSSP) B

STTTTTT



GGGGTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence VLKEEEIEELNRQKNLPFYTAWVIRSTLAEAVAEGACLPLHMAIENAIKAIEQSIADAERLLTPMPFTYV
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Known secondary structure (DSSP) TS
TTSS
TT
B
S
TT



 .........920.........930.........940.........950.........960.........970.........980
Sequence VHVRTFLFIYLMGLPFILVEDLGWLMLVAVSFLGYLMIGLENTAVQLENPFGTDCNHHPLDLYCLEVSQD
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Known secondary structure (DSSP) TTT
SS
SSSSTTS

 .........990....
Sequence LLHLLDLRASAKAQ
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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