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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7os0A_

Fold library idPDB HeaderMoleculeTitle
c7os0A_2.20PDB header: rna binding proteinChain: A: PDB Molecule: cas13a;


Added to library: Sat Jan 22 08:29:51 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MQIGKVQGRTISEFGDPAGGLKRKISTDGKNRKELPAHLSSDPKALIGQWISGIDKIYRKPDSRPTPSKM
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Known secondary structure (DSSP)

GGG

S

STTS

SSSS

B
TT
TTB








B
 .........80.........90.........100.........110.........120.........130.........140
Sequence QFDARDDLGEAFWKLVSEAGLAQDSDYDQFKRRLHPYGDKFQPADSGAKLKFEADPPEPQAFHGRWYGAM
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Known secondary structure (DSSP) TTS

GGG
TT
S

B
TTS

SSB
B


SSGGGGB
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SKRGNDAKELAAALYEHLHVDEKRIDGQPKRNPKTDKFAPGLVVARALGIESSVLPRGMARLARNWGEEE
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Known secondary structure (DSSP) TTT
SST

B
TTSSBS



SSS



T




SSGGGS



 .........220.........230.........240.........250.........260.........270.........280
Sequence IQTYFVVDVAASVKEVAKAAVSAAQAFDPPRQVSGRSLSPKVGFALAEHLERVTGSKRCSFDPAAGPSVL
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Known secondary structure (DSSP) TSS
TSSS




S






GGG


 .........290.........300.........310.........320.........330.........340.........350
Sequence ALHDEVKKTYKRLCARGKNAARAFPADKTELLALMRHTHENRVRNQMVRMGRVSEYRGQQAGDLAQSHYW
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Known secondary structure (DSSP) TT
SS
S
SS


SS
GGG
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence TSAGQTEIKESEIFVRLWVGAFALAGRSMKAWIDPMGKINDRDLTAAVNIRQVISNKEMVAEAMARRGIY
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Known secondary structure (DSSP) S
TT






TTS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence FGETPELDRLGAEGNEGFVFALLRYLRGCRNQTFHLGARAGFLKEIRKELEKTRWGKAKEAEHVVLTDKT
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Known secondary structure (DSSP)
S
GGGTTSS





TT
T
SS
TTSS



 .........500.........510.........520.........530.........540.........550.........560
Sequence VAAIRAIIDNDAKALGARLLADLSGAFVAHYASKEHFSTLYSEIVKAVKDAPEVSSGLPRLKLLLKRADG
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Known secondary structure (DSSP) TTGGGSS
S




S
S

 .........570.........580.........590.........600.........610.........620.........630
Sequence VRGYVHGLRDTRKHAFATKLPPPPAPRELDDPATKARYIALLRLYDGPFRAYASGITGTALAGPAARAKE
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Known secondary structure (DSSP) TTSS
GGGGGG








GGGGGSTT

T
 .........640.........650.........660.........670.........680.........690.........700
Sequence AATALAQSVNVTKAYSDVMEGRTSRLRPPNDGETLREYLSALTGETATEFRVQIGYESDSENARKQAEFI
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Known secondary structure (DSSP) TTTSTTGGG


GGGGS



TT




T
 .........710.........720.........730.........740.........750.........760.........770
Sequence ENYRRDMLAFMFEDYIRAKGFDWILKIEPGATAMTRAPVLPEPIDTRGQYEHWQAALYLVMHFVPASDVS
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Known secondary structure (DSSP) TT


TT


S
SS













GGGS
 .........780.........790.........800.........810.........820.........830.........840
Sequence NLLHQLRKWEALQGKYELVQADARREALDLVKRFRDVLVLFLKTGEARFEGRAAPFDLKPFRALFANPAT
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Known secondary structure (DSSP)
SS






TTTTTTTTS

SS

GGGGGGBSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FDRLFMATASEPELRVARTLRGLRQIARYNHMAVLSDLFAKHKVRDEEVARLAEIEDETQEKSQIVAAQE
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Known secondary structure (DSSP) S



TTT
B


SSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LRTDLHDKVMKCHPKTISPEERQSYAAAIKTIEEHRFLVGRVYLGDHLRLHRLMMDVIGRLIDYAGAYER
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Known secondary structure (DSSP)
TT
T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DTGTFLINASKQLGAGADWAVTIAGAANTDARTQTRKDLAHFNVLDRADGTPDLTALVNRAREMMAYDRK
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Known secondary structure (DSSP) TTTTTTT

TTGGG

SSS


TTTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RKNAVPRSILDMLARLGLTLKWQMKDHLLQDATITQAAIKHLDKVRLTVGGPAAVTEARFSQDYLQMVAA
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Known secondary structure (DSSP) TTTT

STT
TTSSB


SS
 .........1130
Sequence VFNGSVQNPK
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Known secondary structure (DSSP) TT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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