Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7opxA_

Fold library idPDB HeaderMoleculeTitle
c7opxA_2.63PDB header: virusChain: A: PDB Molecule: capsid protein vp1;


Added to library: Sat Jun 25 09:01:01 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GEIVKTVANTVESEIKAELGVIPSLNAVETGATSNTEPEEAIQTRTVINMHGTAECLVENFLGRSALVCM
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)



SB


B







TT

TT


GGGS





S



B



B
GGGS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence RSFEYKNHSTSTSSIQKNFFIWTLNTRELVQIRRKMELFTYLRFDTEITIVPTLRLFSSSNVSFSGLPNL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S



SS







S
SSSS





SS








 .........150.........160.........170.........180.........190.........200.........210
Sequence TLQAMYVPTGARKPSSQDSFEWQSACNPSVFFKINDPPARLTIPFMSINSAYANFYDGFAGFEKKATVLY
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)
TTS



STT
GGGG
SSS
SSS





SSSSS


SBSSS

STTS
B
 .........220.........230.........240.........250.........260.........270.........280
Sequence GINPANTMGNLCLRVVNSYQPVQYTLTVRVYMKPKHIKAWAPRAPRTMPYTNILNNNYAGRSAAPNAPTA
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) T

GGG



S


SS





S



SS






SSSSSBTTB
 .........290.......
Sequence IVSHRSTIKTMPNDINL
Predicted secondary structure













SS confidence
















Known secondary structure (DSSP) SS


S
TT

TT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D