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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7opkA_

Fold library idPDB HeaderMoleculeTitle
c7opkA_3.00PDB header: rnaChain: A: PDB Molecule: 5'-3' exoribonuclease;


Added to library: Sat Jul 9 08:59:08 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GIPAAFRWLSNKYPKIISPVVEERPIVMPDGTEIPVDATRPNPNGEEFDNLYLDMNGIVHPCSHPEDKPA
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Known secondary structure (DSSP)

TTSGGG






TTS



TTS

TTSS

STS
SSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PKDEEEMMIEIFKYTDRIVKMVRPRKILMIAVDGVAPRAKMNQQRSRRFRAAQEAKEKEEEKKKAFDSNS
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Known secondary structure (DSSP)
SS

SS


S

TT




GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence ITPGTPFMDILAASLRYWCAYKLNTDPAWAKLKVIISDATVPGEGEHKIMEFIRSQRSSPEHNPNTRHVI
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Known secondary structure (DSSP) SSTTS
GGGTT

TTS
S
TSTT

TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence YGLDADLIMLGLATHEPHFRVLREDVFFQEKPFIWLHVSILREYLAAELEVPNLPFRWDLERAIDDWVFL
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Known secondary structure (DSSP)
S
TT

SS









SS
SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence CFFVGNDFLPHLPALEIRENGIDTLTAIWKDNLPIMGGYLTKDGHVDLERAQYILNGLAKQEDAIFRRRR
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Known secondary structure (DSSP) GGGG

SSS


TT

GGGTSS
STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence EVEERREAVDTVRLWEEGYADRYYEQKFKVDPKDIEFRHKVGRAYAEGLAWVLQYYYQGCPSWEWFYPYH
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Known secondary structure (DSSP)


SS
TTSTTTT
S
TT


S
SS




S
 .........430.........440.........450.........460.........470.........480.........490
Sequence YAPFAADFVDLAKMEIKFEKGRISRPFEQLMSVLPAASRHAIPEVYHDLMTDPNSPIIDFYPEEFEIDLN
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Known secondary structure (DSSP) S


GGG


GGG













GGGGGGS
GGG
TT
TTGGG

SS


T
 .........500.........510.........520.........530.........540.........550.........560
Sequence GKKMAWQGVALLPFIEMPRLLAAMKEREHLLSEEDRARNEPGFDVLLISDAHPGLYEDITSHFYSKKQGA
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Known secondary structure (DSSP) T
SSSSSS





TTGGGS
TS



TTSTTSSSS


 .........570.........580.........590.........600.........610.........620.........630
Sequence PKFKLNPRRSDGLAGKVEKIEGYVPHGSLVYPLARNSMPDVDYDRSITVRYIMPSSAHQHKSMLLRGVKL
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Known secondary structure (DSSP) S
TTTTTS



TT

TTS
B


STT

S

BSS





SS



S

TT


 .........640.........
Sequence PPPALSRSDIEIIRSKAKN
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Known secondary structure (DSSP)





T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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