Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7oopM_

Fold library idPDB HeaderMoleculeTitle
c7oopM_2.90PDB header: transcriptionChain: M: PDB Molecule: transcription elongation factor spt6;


Added to library: Sat Oct 9 09:49:10 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DQDNEIRATDLPERFQLRSIPVKGAEDDELEEEADWIYRNAFATPTISLTIQKIKEALGFMRNQHFEVPF
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)

SS
SSS





SSTS

SS


TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence IAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQYEQRALDTTDMERLKDVQSMD
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) STTT





SSTTTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence ELKDVYNHFLLYYGRDIPLKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEP
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
-

-










TT
TTTSSS
TS

S




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYS
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)
-

SSSS
ST
S


T
SSSSGGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERAL
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TSSGGG

TTTS



S





SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence QQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRGIRVLGIAFSSARDHPVFCALVNGEGEV
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TS









S
TT


SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TDFLRLPEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHEIGVELVDNELAILYMN
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)

S

S

SST




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence SKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINR
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)

SSS



SS


GGGGTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)

GGGTTSSS

T




STS


TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KIDEVLDGSRVHPETYEWARKMAVDALPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIR
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)


GGGSSSS
GGG



S
GGGS
TT
S

 .........710.........720.........730.........740.........750.........760.........770
Sequence AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAIGVKTRLDNGVTGFIPTKFLSD
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) STT


S






T

TTTS
TT






TTS

T
 .........780.........790.........800.........810
Sequence KVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM
Predicted secondary structure
















SS confidence







































Known secondary structure (DSSP) SSS

GGGT

TTSB


BTTTTB

B
SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D