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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ojlL_

Fold library idPDB HeaderMoleculeTitle
c7ojlL_3.30PDB header: viral proteinChain: L: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Dec 4 08:37:44 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVESLNVLLDNRSSHYEEIIASCHQGINNKLTAHEVKLQIEEEYQVFRNRLRKGEITGQFLKVDKSRLLN
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Known secondary structure (DSSP)



GGGSB



SSTTSS

TT

TSS




 .........80.........90.........100.........110.........120.........130.........140
Sequence DFNNLYVDEVTATKDNIEHLIYQFKRASPILRFLYANIGKECQMQYWRSFLNKVKSLRILNTRRKLLLIF
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Known secondary structure (DSSP) TTSTTTS

S


TTSST
B




TT
S


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DALILLASIHDQTRHKCSKGWLGSCFISVNDRLVSLESTKRDLEKWVGRRQQSERPPDKNQILISMFQKT
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Known secondary structure (DSSP)



SB
SS
SSS



 .........220.........230.........240.........250.........260.........270.........280
Sequence ILKATAALKDVGISVEHYKINMEVICPDSYDLILNFDVSGVVPTISYQRTEDEKFPFIMGGVELLESTDL
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Known secondary structure (DSSP) TTTT

GGGS


GGGS
SS
T









S


TT


SBS

S
SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ERLSSLSLALVNSMKTSSTVKLRQNEFGPARYQVVRCKEAYCQEFLLSGAEFQLIYQKTGECSKCYAIND
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Known secondary structure (DSSP) TTS





S




GGGGGSS
STTS

SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence NRVGEICSFYADPKRYFPAIFSAEVLQTTVSTMISWVKDCSELEEQLCNINSLTKMILVLILAHPSKRSQ
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Known secondary structure (DSSP) SSSS


GGG
GGGSS
TTSSS
TTTGGGS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence KLLQNLRYFIMAYVSDYHHKDLIDKLREELITDVEFLLYRLVRALVNLILSEDVKSMMTNRFKFILNISY
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Known secondary structure (DSSP) SSTT





SS
SS
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence MCHFITKETPDRLTDQIKCFEKFLEPKLEFGHVSINPADVATEEELDDMVYNAKKFLSKEGCTSIKGPDY
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Known secondary structure (DSSP) GGGGS
SS
S
T

S

SS

TBB

SSSSS


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence KKPGVSKRFLSLLTSSFNNGSLFKESEVKREIKDPLVLDLASNKSVVVNKYTDGSRVLNYDFNKLTALAV
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Known secondary structure (DSSP) S
S

BTTTT

SS



TT


S
S
S


BSSSSB

S

 .........640.........650.........660.........670.........680.........690.........700
Sequence SQLTEVFSRKGKHLLNKQDYDYKVQQAMSNLVLLLDGGASVYFDQLKETVERIIDQYRQPSVNDLDEVVP
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Known secondary structure (DSSP) TTTGGGS
SS


TTTTT



GGGGGGT
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence NKFYIRLIKGELSNHMVEDFDYDVLPGNFYEEFCDAVYKNNKLKERYFYCGTKAVATRTYFDQEYFQCFK
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Known secondary structure (DSSP)
S
STT

STTS

S



TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence SILLIMNANLNFKFDMGRLSDDVRISERESNSEALSKALSLTNLKNLCFYSQESPQSYSSTGPDTGRLKF
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Known secondary structure (DSSP)





SS




TT

GGGTTSSTT

SB

SSS
TT
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence SLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEALSLQLSGSCLNNEREFENAILSMKLNVSLAHVSYSM
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Known secondary structure (DSSP)





SSS







SS
B
SS
TT

 .........920.........930.........940.........950.........960.........970.........980
Sequence DHSKWGPMMCPFLFLATLQNLIFLSKDLQADIKGRDYLSTLLTWHMHKMVEIPFNVVSAMMKSFIKAQLG
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Known secondary structure (DSSP)
BSS

TT



SS

ST


T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LKKKTTQSITEDFFYSNFQIGVVPSHVSSILDMGQGILHNTSDFYALISERFINYAISCICGGTIDAYTS
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Known secondary structure (DSSP) TT





TTS




SS


TTTSSS

BS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SDDQISLFDQVLTELMQRDPEEFKTLIEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFYVWGDEVPLLTK
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Known secondary structure (DSSP) SS


TT

B
TT
SS


SSS



SSS



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FVAAALHNIKCKEPHQLAETIDTIIDQSVANGVPVHLCNLIQKRTLSLLQYARYPIDPFLLNCETDVRDW
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Known secondary structure (DSSP) T


SS
TTT

TS



TTS

TT

S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence VDGNRSYRIMRQIERLIPDACGRIRSMLRKLYNKLKTGQLHEEFTTNYLSSEHLSSLSNLCELLGVEPPS
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Known secondary structure (DSSP) T

STTTSTS
SSTTTS
STTS



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence ESDLEFSWLNLAAHHPLRMVLRQKIIYEKVPTIVKTIQNKLSFQSSIASGFVGLCRTLGSKCVRGPNKES
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Known secondary structure (DSSP) TTTTT
TTSSS





SS












TTSS
B

SSS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LYIKSIQSLISDIQGIEPLIDSHGVQYWRVPLNIRDGNEGVISYFRPLLWDYMCISLSTAIELGAWVLGE
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Known secondary structure (DSSP) B
STT

TT



SGGGSS
TTTGGG
TTS
GGGGS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence PKKVRVLEFFKHNPCDYFPLKPAAVGLNHIIHSLRRLYPSVFEKHILPFMRIKFLDLCVALDVNCEALSL
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Known secondary structure (DSSP)
B


S






S







STTTTTT
TTGGG


TTTTTT
SS
S
 .........1480.........1490........
Sequence VSHIVKWKREEHYIVLSSELRLSHTRTH
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Known secondary structure (DSSP) SS


S
TTGGGG

B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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