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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7oimA_

Fold library idPDB HeaderMoleculeTitle
c7oimA_4.00PDB header: signaling proteinChain: A: PDB Molecule: e3 ubiquitin-protein ligase rnf213;


Added to library: 4.00
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KELLKGKKQAAVVMLDRIFSVLQPWSDINLQSFMTQFLQFYSVVQYEEKEVWTNLWEHVKKQMAPFLEGK
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Known secondary structure (DSSP)
TTSS





TTTS


 .........80.........90.........100.........110.........120.........130.........140
Sequence LTLGLSILFMVEAAEFTVPKKDLDSLCYLLIPSAGSPEALHSDLSPVLRIRQRWRIYLTNLCLRCIDERC
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Known secondary structure (DSSP)
TTT



GGGTTTTS
TT

SGGGS

TTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DRWLGILPLLHTCMQKSPPKKNSKSQPEDTWAGLEGISFSEFRDKAPTRSQPLQFMQSKMALLRVDEYLF
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Known secondary structure (DSSP) SGGGGTTSSS






TTTS
ST
SS

GGGTSSS




TGGGGGS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence RSWLSVVPLESLSSYLENSIDYLSDVPVRVLDCLQGISYRLPGLRKISNQNMKKDVENVFKMLMHLVDIY
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Known secondary structure (DSSP) TTS
STTTT
TTTTTS



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QHRIFGENLLQIYLTECLTLHETVCNITANHQFFEIPALSAELICKLLELSPPGEKSYEDLVTSTLQEAL
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Known secondary structure (DSSP)
TTTTTTTTTT

SSS
TTT





 .........360.........370.........380.........390.........400.........410.........420
Sequence ATTRNWLRSLFKSRMLSISSAYVRLTYSEEMAVWRRLVEIGFPEKHGWKGSLLGDMEGRLKQEPPRLQIS
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Known secondary structure (DSSP)

S
S


SSSS


TTSS
SS


TTSSSSTTTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FFCSSQCRDGGLHDSVSRSFEKCVIEAVSSACQSQTSVLEGLSCQDLQKFGTLLSAVITKSWPVHNGEPV
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Known secondary structure (DSSP) TSSSS



SS
TT



SS




S

SSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence FDVDEIFKYLLKWPDVRQLFELCGTNEKIIDNITEEGRQLMATAESVFQKVAGELENGTIVVGQLELILE
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Known secondary structure (DSSP)
SS
T
TSS
SSSSSS

B
 .........570.........580.........590.........600.........610.........620.........630
Sequence HQSQFLDIWNLNRRRDVRSLLKRRRDDLLFLKQEKRYVESLLRQLGRVKHLVQVDFGNIEIIHSQDLSNK
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Known secondary structure (DSSP) TT


TTTTT

TTTTS
S
SB
 .........640.........650.........660.........670.........680.........690.........700
Sequence KLNEAVIKLSYKRETHYCLSPDIREMASKLDSLKDSHIFQDFWQETAESLNELKVSLPEVLEYLYNPCYD
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Known secondary structure (DSSP) GGGG









SS

SSTSS
STT


T
 .........710.........720.........730.........740.........750.........760.........770
Sequence NFYTLYENLKSGKITFAEVDAIFKDFVDKYDELKNDLKFMCTMNPQDQKGWISERVGQIKEYHTLHQAVS
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Known secondary structure (DSSP) TTT


SGGGTT

TTTTS

SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence SAKVILQVRRALGVTGDFSVLNPLLNFADSFEDFGNESPQFIKAKQLLQDISEPRQRCLEELARQTELVA
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Known secondary structure (DSSP) T






SST









TTGGGSSS
SSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence WLHKALEDINELKVFVDLASISAGENDIDVDRVACFHDAVQGYASLLYKMDERTNFSDFMNHLQELWRAL
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Known secondary structure (DSSP) T
SGGGS
SSTT

SS

 .........920.........930.........940.........950.........960.........970.........980
Sequence DNDQHLPDKLKDSARNLEWLKTVKESHGSVELSSLSLATAINSRGVYVIEAPKDGQKISPDTVLRLLLPD
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Known secondary structure (DSSP) T
TTTTT







SS




SSS


TTSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PEALRTYSTEELKELLNKLMLMSGKKDHNSNTEVEKFSEVFSNMQRLVHVFIKLHCAGNMLFRTWTAKVY
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Known secondary structure (DSSP)




T







SSSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CCPDGGIFMNFGLELLSQLTEKGDVIQLLGALCRQMEDFLDNWKTVVAQKRAEHFYLNFYTAEQLVYLSS
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Known secondary structure (DSSP)
STT


S
TT



S
TT
SGGGSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ELRKPRPSEAALMMLSFIKGKCTVQDLVQATSACESKADRYCLREVMKKLPQQLLSEPSLMGKLQVIMMQ
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Known secondary structure (DSSP) TTSSS

TTTTSSS

SS

SSTTTGGG

SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SLVYMSAFLPHCLDLDALGRCLAHLATMGGTPVERPLPKGLQAGQPNLILCGHSEVLPAALAIYMQAPRQ
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Known secondary structure (DSSP) S
TTT
TTS

S








TT

SSS


GGGSTSSTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence PLPTFDEVLLCTPATTIEEVELLLRRCLTSGSQGHKVYSLLFADQLSYEVGCQAEEFFQSLCTRAHREDY
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Known secondary structure (DSSP)



SSS

SS

T
S

SS

TGGGS



TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence QLVILCDAAREHCYIPSTFSQYKVPLVPQAPLPNIQAYLQSHYQVPKRLLSAATVFRDGLCVGIVTSERA
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Known secondary structure (DSSP)
TT
TTSSTGGGTT




T


SSS

SGGGSSSS

SSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GVGKSLYVNTLHTKLKAKLRDETVPLKIIRLTEPHLDENQVLSALLPFLKEKYQKMPVIFHIDISTSVQT
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Known secondary structure (DSSP) SSSSSSS





SS

TTTSSSSSS
S


S

TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence GIPIFLFKLLILQYLMDINGKIWRRSPGHLYLVEIPQPLFKFLDLFPKVTCRPPKEVIDMEPAMDPVEFC
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Known secondary structure (DSSP) STS

SSS


TTS

TTSS



TTTSSS



S
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence SEAFQRPYQYLKRFHQQQNLDTFQYEKGSVEGSPEECLQHFLIYCGLINPSWSELRNFAWFLNCQLKDCE
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Known secondary structure (DSSP) STT

TTS



SS

S

TS

SS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ASIFCKSAFTGDTLRGFKNFVVTFMILMARDFATPTEEDLAPFSLRKRWESEPHPYVFFNGDHMTMTFIG
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Known secondary structure (DSSP) SSS


SS



TTS

S

SSS



SSS

S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FHLETNNNGYVDAINPSNGKVIKKDVMTKELFDGLRLQRVPFNIDFDNLPRYEKLERLCLALGIEWPIDP
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Known secondary structure (DSSP)

TTSS
TTS



S




T


S

TTS



SS



 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DETYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLKRGSVEAETMKLVKVHGGTTPSM
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Known secondary structure (DSSP)
SSS


ST



SSS
STT

S



TT

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence IYSKVKEAERTAFSNKAQHKLDTILFFDEANTTEAVSCIKEILCDRTVDGEHLHEDSGLHIIAACNPYRK
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Known secondary structure (DSSP) T



STTSSSTSS
TT

TTT





B
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence HSQEMILRLESAGLGYRVSAEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLNDSAEKLYIQQIVQ
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Known secondary structure (DSSP)

TTSSB

SS
SSS
S
BSSSSBGGGBSS





TTSGGG





STT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence RLVDSVSVNPSETCVIADVLSASQMFMRKRENECGFVSLRDVERCVKVFRWFHDHSDMLLKELDKFLHES
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Known secondary structure (DSSP) S

TTS
SSSSS

SS

TTTSSTTTTTTTS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SDSTHTFERDPVLWSLVMAIGVCYHASLEEKASYRTAIARCFPKPYNSSRAILDEVTHVQDLFLRGAPIR
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Known secondary structure (DSSP) S
STT




TTTTTT
S
TTSS
GGG
STS


 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence TNIARNLALKENVFMMVICIELKIPLFLVGKPGSSKSLAKIIVADAMQGQAAFSELFRCLKQVHLVSFQC
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Known secondary structure (DSSP) SS



TT

B

B

TTS
S

SSS
SSTTGGGS




 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SPHSTPQGIISTFKQCARFQQGKDLGQYVSVVVLDEVGLAEDSPKMPLKTLHPLLEDGCIEDDPAPYKKV
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Known secondary structure (DSSP)
TT

TTS
TTS

TTTTSSTT
TT
GGGSTTTSSSSS


TT


 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence GFVGISNWALDPAKMNRGIFVSRGSPNEKELIESAEGICSSDRLVQDKIRGYFAPFAKAYETVCQKQDKE
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Known secondary structure (DSSP) B


SB


TTTSTTSB

B




TTTT
SSSTT
SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence FFGLRDYYSLIKMVFAKAKASKRGLSPQDITHAVLRNFSGKDNIQALSIFTASLPEARYKEEVSTVELIK
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Known secondary structure (DSSP)


SS


S


TT

S
TT



S


 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence QNIYPGPQASSRGLDGAESRYLLVLTRNYVALQILQQTFFEGQQPEIIFGSSFPQDQEYTQICRNINRVK
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Known secondary structure (DSSP) S

SSTT
SSS






SSS
TT

SS






TT

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence ICMETGKMVVLLNLQNLYESLYDALNQYYVYLGGQKYVDLGLGTHRVKCRVHTAFRLIVIEEKDVVYKQF
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Known secondary structure (DSSP) T

S

TTTTTTSTTGGG




SSS
SSS

SS

TS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence PVPLINRLEKHYLDMNTVLQPWQKSIVQELQQWAHEFADVKADQFIARHKYSPADVFIGYHSDACASVVL
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Known secondary structure (DSSP)
SS

SSTTTS

B


SS






BTT

SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence QAVERQGCRDLTEELYRKVSEEARSILLDCATPDAVVRLSGSSLGSFTAKQLSQEYYYAQQHNSFVDFLQ
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Known secondary structure (DSSP)




SSTTB
GGGBSS
STS

S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence AHLRMTHHECRAVFTEITTFSRLLTGNDCDVLASELRGLASKPVVLSLQQYDTEYSFLKDVRSWLTNPGK
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Known secondary structure (DSSP) SS

SS
SSS



SSTTTTT



TTS

STSS
S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence RKVLVIQADFDDGTRSAQLVASAKYTAINEINKTQGTKDFVFVYFVTKLSRMGSGTSYVGFHGGLWRSVH
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Known secondary structure (DSSP) S
SSS

TTS

SS



SSSTTSSS




SS

 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence IDDLRRSTIMASDVTKLQNVTISQLFKPESQFLDTTRLVQSCVQGAVGMLRDQNESCARNMRRVTILLDL
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Known secondary structure (DSSP)
S
SS

SSB
S
S
GGGGG




SB
TT
B
SSSS


S
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LNEDNTRNASFLRESKMRLHVLLNKQEENQVRSLKEWVTREAANQDALQEAGTFRHTLWKRVQDVVTPIL
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Known secondary structure (DSSP) SSSSSTSSS
STTT
T
SS
 .........2950.........2960.........2970.........2980.........2990..
Sequence ASMIAHIDRDGNLELLAQPDSPAWVQDLWMFIYSDIKFLNISLVSc7oimA_
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Known secondary structure (DSSP)
SSSTTSSS

TT
TTTS







B


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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