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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7odfA_

Fold library idPDB HeaderMoleculeTitle
c7odfA_2.70PDB header: rna binding proteinChain: A: PDB Molecule: cas_phi3;


Added to library: Sat Jul 24 08:25:19 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LTKIRREFPNKKFSSTDMKKAGKLLKAEGPDAVRDFLNSCQEIIGDFKPPVKTNIVSISRPFEEWPVSMV
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Known secondary structure (DSSP)
T
SSS


T




S




SS
GGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GRAIQEYYFSLTKEELESVHPGTSSEDHKSFFNITGLSNYNYTSVQGLNLIFKNAKAIYDGTLVKANNKN
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Known secondary structure (DSSP) TS



SSSS


SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence KKLEKKFNEINHKNGHLNNPPGINRNIYGYQGCAAKVFVPSKHKMVSLPKEYEGYNRDPNLSLAGFRNRL
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Known secondary structure (DSSP)


S
SS








STT



TTT
SS



TTS
S



TTSB





GG
 .........220.........230.........240.........250.........260.........270.........280
Sequence EIPEGEPGHVPWFQRMDIPEGQIGHVNKIQRFNFVHGKNSGKVKFSDKTGRVKRYHHSKYKDATKPYKFL
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Known secondary structure (DSSP) GS
TTSTT


GGG
TTS
TTSTT


TTGGGG

TT






TTT

S





TTT


SSS

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EESKKVSALDSILAIITIGDDWVVFDIRGLYRNVFYRELAQKGLTAVQLLDLFTGDPVIDPKKGVVTFSY
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Known secondary structure (DSSP) T

TT
T


TT
BTB
S

TTTTB
 .........360.........370.........380.........390.........400.........410.........420
Sequence KEGVVPVFSQKIVPRFKSRDTLEKLTSQGPVALLSVDLGQNEPVAARVCSLKNINDKITLDNSCRISFLD
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Known secondary structure (DSSP)
TTTS






B
GGGSS

SSSSSSTT



TTTS


 .........430.........440.........450.........460.........470.........480.........490
Sequence DYKKQIKDYRDSLDELEIKIRLEAINSLETNQQVEIRDLDVFSADRAKANTVDMFDIDPNLISWDSMSDA
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Known secondary structure (DSSP) TS
TTT

TTTS
GGG

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RVSTQISDLYLKNGGDESRVYFEINNKRIKRSDYNISQLVRPKLSDSTRKNLNDSIWKLKRTSEEYLKLS
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Known secondary structure (DSSP) S


TTT



SSS


S





S
 .........570.........580.........590.........600.........610.........620.........630
Sequence KRKLELSRAVVNYTIRQSKLLSGINDIVIILEDLDVKKKFNGRGIRDIGWDNFFSSRKENRWFIPAFHKA
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Known secondary structure (DSSP) SS





TTSS
S


B

SSSGGGGS

B



S
 .........640.........650.........660.........670.........680.........690.........700
Sequence FSELSSNRGLCVIEVNPAWTSATCPDCGFCSKENRDGINFTCRKCGVSYHADIDVATLNIARVAVLGKPM
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Known secondary structure (DSSP) T



TT
SSB
SSS

B
GGGB
SS
SSS

TTTTSSS

 ...
Sequence SGP
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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