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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7o78B_

Fold library idPDB HeaderMoleculeTitle
c7o78B_1.58PDB header: lyaseChain: B: PDB Molecule: polysaccharide lyase from pseudopedobacter saltans,


Added to library: Sat Jul 31 08:42:33 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GKHILVASVKEVYSKVDQLKAGDTLLLKDGIYKDIQLVVKRSGSKEKPIVIAAQNGGKVFFTGDAKVELR
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Known secondary structure (DSSP)


STT

TT

ST





SSS
SSTTSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence GEYLVLKDIYFKDGNRNVNQWKSHGPGLVAIYGSYNRVTGCVFNAFDEANSAYITTSLTEEGKVPKHCRI
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Known secondary structure (DSSP) SSSS



GGG

TTS

S
SSS
S
S

SS
S
S


TT




S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DHCVFTDKITFDQVINLNNRPRADKESKVLGEAMYHRIDHCFFSNPPKPGNAGGGIRVGYYRNDIGRCLI
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Known secondary structure (DSSP) S



SSS
S
SSSS

TT
SS
B




S



SSS


S
SSTTBB


 .........220.........230.........240.........250.........260.........270.........280
Sequence DSNLFVRQDSEAEIVTSKSQENVYYGNTILNCQGTLNFRHGDKQVALNNFFISTDNKYGYGGMFVWGSQH
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Known secondary structure (DSSP) S

SSSSBS
S
S
SS
SS
S

S

SS




SBS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IIANNYFNLKKTIKARGNAALYLNPGPEGSEHALAFNSLIVNNFFDDNNGYDINFEPLLERRKEFAKEVN
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Known secondary structure (DSSP) S


SS

GGGTS

BSTTSTT


BS
S
S
SSS
TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AEFKLPYNITIEGNLFASKQGDKHIPFLGNLDKNNLQNNYSFGQMANDKLFTNVKPTTDGSYNPQSYKGY
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Known secondary structure (DSSP)


B


S
S

SSBTT

SS

TTS


S
BTTGGGS

SSS


GGGT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QLANVKDIKNIEGIDLDIQNLINKGIEGNPLTWNDVRPSWLVEIPGSYAKEGTLDQETKIRFQRVLARDR
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Known secondary structure (DSSP)










TT




S





S
TT

S

SSSS

 ..
Sequence NN
Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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