Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7nyyA_

Fold library idPDB HeaderMoleculeTitle
c7nyyA_6.80PDB header: dna binding proteinChain: A: PDB Molecule: chromosome partition protein mukb;


Added to library: Sat Jul 10 11:20:26 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSG
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)



TB

SSSTTSS


TTT




SSS
SGGGT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SRDKGLHGKLRAGVCYSTLDVINSRHQRVVVGVRLQQVAGRDRKVDIKPFMIQGLPTAIQPTQLLTENVG
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) TTTTTTTTTB
SS
TT


SSS
S

TT



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ERQARVLPLNELKDRLDEMEGVQFKQFNSITDYHAQMFDLGVIPKRLRSASDRSKFYRLIEASLYGGISS
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) SSS


SSS

SSTT
SSS


ST
SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AITRSLRDYLLPENSGVRKAFQDMEAALRENRITLEAIRVTQSDRDLFKHLITEATSYVSADYMRHANER
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence RTHLDEALALRGELFGSHKQLATEQYRHVEMARELAEQSGASSDLETDHQAASDHLNLVQTAMRQQEKID
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
 .........360.........370.........380.........390.........400.........410.........420
Sequence RYQVDLEELSYRLEEQTDVVEEAGELQAEYEARTEATEQEVDELKSQLADYQQALDVQQTRAIQYQQALQ
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TGGGTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ALERARELCRLPDLSVDNAEEWLETFQAKEQQATEALLALEQKLSVADAAHNQFEQAYQLVKNIVGETSR
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TT
SS

TTTTS

S

 .........500.........510.........520.........530.........540.........550.........560
Sequence SEAWQSARELLRDWPSQRHLADRVQPLRMRLSELEQRLNNQQNAERLLSEFCKRQGRQYQAEDLEALQNE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTSSSSTTGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence LEARQEALSLSVNEGGERRMEMRQELEQLKQKIQSLTARAPVWLAAQDTLNQLCEQSGETLASSNDVTEY
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) SSS


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence MQQLLEREREATVERDEVAAQKRELEKQIERLSQPSGAEDSRMIALAERFGGVLLSEIYDDITIDDAPYF
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) S
BTTTB

T
TTT

TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SALYGPARHGIVVPDLSLVRPHLETLEDCPEDLYLIEGDPQSFDDSVFNAEEQTNAVLVKSSDRQWRYSR
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) GGGGS
S
TT
SSS
TT

S
STT








TTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence YPELPLFGRAARENRLEALNLERDALAERYATLSFDVQKIQRAHQAFSQFVGKHLSVAFDTDPEAEIREL
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)

SS
SSS
TTSTTTTSSS

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence RQRHTELEREVSRFEDQTQQQRQQYAQAKESLTTLNRLIPQVTLLLDETLIDRVEEVREEMDEAQEAARF
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTSS




T
 .........920.........930.........940.........950.........960.........970.........980
Sequence LQQHGSALTKLEPMVAVLQSDPQQHEQLQQDYETAKHSQHQAKQQAFALVEIVQRRVHFSYSDSAGMLSE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) GGGGGGGG

TTTGGGGT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NADLNDKLRQRLEHAESDRSRAREQLRQQQAQYSQFNQVLASLKSSYETKQDMLKELLQEMKDIGVQADA
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)
S






 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence NAEMRARERRDRLHEALSVNRSRVNQLEKQIAFCEAEMENVQKKLRKLERDYYQIREQVVSAKAGWCAVM
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RMVKDNGVERRLHRRELAYMEGGALRSMSDKALGALRLAVADNEHLRDALRLSEDPKRPERKVQFFIAVY
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTT
STTT

GGGGGS
TS

STT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QHLRERIRQDIIRTDDPVDAIEQMEIELARLTEELTAREQKLAISSKSVANIIRKTIQREQNRIRMLNQG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TT

TTTS
SS
GGG
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LQAVSFGQVRGVRLNVNVRESHAILLDVLSEQQEQHQDLFNSQRLTFSEAMAKLYQRLNPQVDMGQRLPQ
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)
B


STT
TGGGTT
TTS
SSTT


SS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence TIGEELLDYRNYLELDVEVNRGSDGWLKAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCR
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TSGGGTTT

STTS
TS
TT




 .........1410.........1420.........1430.........1440.........1450.........1460.......
Sequence LLFLDQAARLDAKSIATLFELCERLQMQLIIAAPENISPEKGTTYKLVRKVFKNHEHVHVVGLRGFG
Predicted secondary structure



























SS confidence


































































Known secondary structure (DSSP) SSGGG

TT
SSSS

SSSTT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D