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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ni5B_

Fold library idPDB HeaderMoleculeTitle
c7ni5B_2.78PDB header: signaling proteinChain: B: PDB Molecule: serine-protein kinase atm;


Added to library: Sat Sep 4 08:52:00 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDAVFRFLQKYIQKET
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Known secondary structure (DSSP)
TS

TSTS

S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence ECLRIASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQELLNYIMDTVKDSSNGAIYGADCSNILLKD
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Known secondary structure (DSSP) T

SSSS

S

S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ILSVRKYWCEISQQQWLELFSVYFRLYLKPSQDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQ
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Known secondary structure (DSSP) TTTS

S


SS


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence CARQEKSSSGLNHILAALTIFLKTLAVNFRIRVCELGDEILPTLLYIWTQHRLNDSLKEVIIELFQLQIY
Predicted secondary structure








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Known secondary structure (DSSP) SS

SSTTS
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence IHHPKGAKTQEKGAYESTKWRSILYNLYDLLVNEISHIGSRGKYSSGFRNIAVKENLIELMADICHQVFE
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Known secondary structure (DSSP) STTS

SGGGT



TSSSSS


TTSTT

S



 .........360.........370.........380.........390.........400.........410.........420
Sequence LGWEVIKDHLQKSQNDFDLVPWLQIATQLISKYPASLPNCELSPLLMILSQLLPQQRHGERTPYVLRCLT
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Known secondary structure (DSSP)
SS

S
GGGS
GGGS

SS

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence EVALCQDKRSNLESSQKSDLLKLWNKIWCITFRGISSEQIQAENFGLLGAIIQGSLVEVDREFWKLFTGS
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Known secondary structure (DSSP)



TTGGGSSSTT
S


GGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence ACRPSCPAVCCLTLALTTSIVPGTFSLKESIMKWLLFYQEVPPILHSNFPHLVLEKILVSLTMKNCKAAM
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Known secondary structure (DSSP) SS


S











S


TTSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NFFQSVPECEHHQKDKEELSFSEVEELFLQTTFDKMDFLTSSIGFSVHQNLKESLDRCLLGLSEQLLNNY
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Known secondary structure (DSSP)




TTT




SS
STTS


S









S
 .........640.........650.........660.........670.........680.........690.........700
Sequence SSEITNSETLVRCSRLLVGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQCAGESITLFKNKTNEEFRIGS
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Known secondary structure (DSSP)
TTTS
TSS
S




TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence LRNMMQLCTRCLSNCTKKSPNKIASGFFLRLLTSKLMNDIADICKSLASFIKKIGAINPLAEEYLSKQDL
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Known secondary structure (DSSP)




SSS

T





S

TT
GGG

 .........780.........790.........800.........810.........820.........830.........840
Sequence LFLDMLKFLCLCVTTAQTNTVSFRAADIRRKLLMLIDSSTLEPTKSLHLHMYLMLLKELPGEEYPLPMED
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Known secondary structure (DSSP) GGGS

SS
S
TTT

TTSS

SSS


 .........850.........860.........870.........880.........890.........900.........910
Sequence VLELLKPLSNVCSLYRRDQDVCKTILNHVLHVVKNLGQSNMDSENTRDAQGQFLTVIGAFWHLTKERKYI
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Known secondary structure (DSSP) TTTTT
GGGTTTSSSS
SSTT
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence FSVRMALVNCLKTLLEADPYSKWAILNVMGKDFPVNEVFTQFLADNHHQVRMLAAESINRLFQDTLLKAL
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Known secondary structure (DSSP)
SS
SS
TTGGGG
SSTTGGGGTB




B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PLKLQQTAFENAYLKAQEGMREMSHSAENPETLDEIYNRKSVLLTLIAVVLSCSPICEKQALFALCKSVK
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Known secondary structure (DSSP)
S
S
TTTS
STT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ENGLEPHLVKKVLEKVSETFGYRRLEDFMASHLDYLVLEWLNLQDTEYNLSSFPFILLNYTNIEDFYRSC
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Known secondary structure (DSSP) TT


TT
SSTS
SGGGSSTTS

GGGT
SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence YKVLIPHLVIRSHFDEVKSIANQIQEDWKSLLTDCFPKILVNILPYFAYEGTRDSGMAQQRETATKVYDM
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Known secondary structure (DSSP) TTS
TTS
TTT



S
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LKSENLLGKQIDHLFISNLPEIVVELLMTLHEPDLDPAPNPPHFPSHVIKATFAYISNCILEILSKSPDS
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Known secondary structure (DSSP) STTTTTTTTTTB




S


STT
B


ST
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YQKILLAICEQAAETNNVYKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYINQRPSCIM
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Known secondary structure (DSSP) S

STTTTSGGGGTT


S
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DVSLRSFSLCCDLLSQVCQTAVTYCKDALENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNEN
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Known secondary structure (DSSP) S
S
TTTGGGGGT
TTTSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LYITIKLLDPFPDHVVFKDLRITQQKIKYSRGPFSLLEEINHFLSVSVYDALPLTRLEGLKDLRRQLELH
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Known secondary structure (DSSP) TS



SSGGGTTTS


S


GGGGTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence KDQMVDIMRASQDNPQDGIMVKLVVNLLQLSKMAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDA
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Known secondary structure (DSSP) TTSSGGG
TTTSTTTTTTTT
S


S

B





S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence SYTKALKLFEDKELQWTFIMLTYLNNTLVEDCVKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYL
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Known secondary structure (DSSP)

TTTGGG
SSTTTBTTS

T
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence QPFRTSRKKFLEVPRFDKENPFEGLDDINLWIPLSENHDIWIKTLTCAFLDSGGTKCEILQLLKPMCEVK
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Known secondary structure (DSSP) TTT



SS
B






SSTTSTT

S

SS

TSSS


SSSTTS

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence TDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFFTSCLRHHFFRCCLDKKSQRTMLAVVDYMRRQKRP
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Known secondary structure (DSSP) ST

TTTT



SS
S

TS

T
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence SSGTIFNDAFWLDLNYLEVAKVAQSCAAHFTALLYAEIYADKKSMDDQEKISSLSEKSKEETGISLQDLL
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Known secondary structure (DSSP) T


TSS


TT


TS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LEIYRSIGEPDSLYGCGGGKMLQPITRLRTYEHEAMWGKALVTYDLETAIPSSTRQAGIIQALQNLGLCH
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Known secondary structure (DSSP)

TGGGGS

SGGGGSTT


SS
TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence ILSVYLKGLDYENKDWCPELEELHYQAAWRNMQWDHCGTSYHESLYNALQSLRDREFSTFYESLKYARVK
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Known secondary structure (DSSP) TTT

S

TT

S




TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence EVEEMCKRSLESVYSLYPTLSRLQAIGELESIGELFSRSVTHRQLSEVYIKWQKHSQLLKDSDFSFQEPI
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Known secondary structure (DSSP) TS


BGGGTS


TTTS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence MALRTVILEILMEKEMDNSQRECIKDILTKHLVELSILARTFKNTQLPERAIFQIKQYNSVSCGVSEWQL
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Known secondary structure (DSSP) T


TT




SS


 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence EEAQVFWAKKEQSLALSILKQMIKKLDASCAANNPSLKLTYTECLRVCGNWLAETCLENPAVIMQTYLEK
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Known secondary structure (DSSP) TT

SS

T
S
T
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence AVEVASDELRNGKMKAFLSLARFSDTQYQRIENYMKSSEFENKQALLKRQRELELDELALRALKEDRKRF
Predicted secondary structure

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Known secondary structure (DSSP)

S

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LCKAVENYINCLLSGEEHDMWVFRLCSLWLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGTKMM
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Known secondary structure (DSSP) TS
STTGGG
TT
TGGGS
GGGGGGGT

SSS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence GGLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFLTKSQLDEDRTEAANRIICTIRSRRPQMVRS
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Known secondary structure (DSSP) STT

TTT



 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence VEALCDAYIILANLDATQWKTQRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGEYGNLVTIQSFKAE
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Known secondary structure (DSSP) S

GGGSS

S


TTSGGGG



TT
B
TTS




SSS


S

B
S
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence FRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVP
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Known secondary structure (DSSP)


SS

SSS
SS

STT


B


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LSQRSGVLEWCTGTVPIGEFLVNNEDGAHKRYRPNDFSAFQCQKKMMEVQKKSFEEKYEVFMDVCQNFQP
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Known secondary structure (DSSP)
SSS

TTS
TTT
S
TTS

TTTS
T


 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence VFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKI
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Known secondary structure (DSSP)
GGG

STT




GGGTTT





S
TTGGGS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence LPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALY
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Known secondary structure (DSSP) SSS



SS


TT
SSGGGSTT
TT


S

 .........2740.........2750.........2760.........2770.........2780.........2790
Sequence LQQQSFNKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV
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Known secondary structure (DSSP)


TTT

S
TTS
GGG
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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