Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7nfeA_

Fold library idPDB HeaderMoleculeTitle
c7nfeA_4.29PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit,dna-


Added to library: Sat Aug 21 08:50:59 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CSLLRLQETLSAADGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIEFREC
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)


SS

TTTTTS

TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence REEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKKIPALDLLIKLLQTFRSSRLMDEFKIGELFSKFY
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TTSTTS




STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPKLPVLAGCLKGL
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TSTTSSS
SSTT

SSS


TS

SS



 .........220.........230.........240.........250.........260.........270.........280
Sequence SSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVL
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTS

SSSST


S
TTTT

TGGGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LKWCAHTNVELKKAALSALESFLKQVSNMVAEMHKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFA
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TSS



TTS

S
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence GPCKVINAKDVDFMYVELIQRCKQMFLTQGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQI
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP)
TTT




TTT




TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLPWKVPTYKDYVDLFRH
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) GGGS
TTSSGGGTS









GGGS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLSSDQMMDSILADEASSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQMIPTSDPAANLHPAKPKDFSAF
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
TT




S











TTSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence INLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVSPDPEKY
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TTTS
TTTTTT



TTTTTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence SCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLN
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) GGG

TTTTS
TTTTTTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence ALEEWSIYIDRHVMQPYYKDILPCLDGYLKTSAAISLEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMK
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S
TTTSTTT




S
GGGS


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence SYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATPMYQL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)

B
S
SS





SS


TTTS
SS


 .........850.........860.........870.........880.........890.........900.........910
Sequence YKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGR
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) T
SSSGGG
SSS
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence CIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVF
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)

TTT
TTTSS
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASLCLLDLVKW
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TS
TTSTTS
B




TT



S
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPSGILAQPTL
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTSS
TTTSTT


TTSS
SSSS
S
TTT
SST
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMHDIIAAEK
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TS
SSS

SSTTSS
TTS
S

T

S

S

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVMA
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)


STT

SS

SSSSSSSS
ST
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence HLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVSACKQLHRAGL
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) STT

SS

SS
S
ST
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LHNILPSQSTDLHHSVGTELLSLVYKGIAPPSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLST
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) S



SSS
TT





SSS
S



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKL
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)



STTT
STTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence ATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHL
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TTTTTTGGGTTTS
S
TSS
TTT
TT

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence KGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDALELSQSPML
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTT
GGGS
S
STTS
TTST
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYEMFRKDDPRLSFTRQSFVDRSLLTLL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTSSSSS
S
S




T
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence WHCSLDALREFFSTIVVDAIDVLKSRFTKESTFDTQITKKMGYYKILDVMYSRDDVHAKESKINQVFNEL
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) S
S




T


SSSSS
S

TT

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TKTLIKLCYDAFTENMLLERRRLYHCAAYNCAISVICCVFNELKFYQGFLFPEKNLLIFENLIDLKRMDE
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)



S

TT










S









S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LNRHECMAPLTALVKHMHRSLLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQ
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TTSSTT



TTS
TTTTTTTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LAASENNIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVEC
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTSSS



S
SSS
S
S



SS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence WKDCLSIPYRLIFEKFDNSVGIQLLGIVMANDLPPYDPSEYFQALVNNMSFVRYKEVYAAAAEVLGLILR
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TSSS



SST

TSS

S



TTS

TTSST
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence YVLEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCR
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)




TTSTT
GGGGGG
TTT

ST
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence VEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMY
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TTT
S

TTS

GGGS
GGGTT
SS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence NILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNS
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)

TTTTTSGGG
S
STTTS
SS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDWRAQVVLYRSYRHGDLPDIQ
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) T

TT
TTTTSTTTTSBS



SS




















SSS



 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence IKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPF
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP)
BS



SS

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence VSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRPDVLRWVELAKLYRSIGEYDVLRGI
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) T
TGGGGS
T


T
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence FTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLE
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TS

STT




SS
S

SS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence YCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQQSLLTFIDKAMHGELQKAILELHYSQEL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTS
TTS
SS

GGGTS



SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence SLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVP
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) T
S
TT
T
S
S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence LKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLDISSLIRSCKFSMKMKMIDSARKQNNFSL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) T



TTTS
S



T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence AMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLVSSYLSKNILAFRDQNIL
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TSTTST



S
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAGLYQRAFQHLSEAVQAAEEEAAAG
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) SSSTTSSSS
S


SSS



 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence VIDAYMTLADFCDQQLRKEEELQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTKEI
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) T

TTS

TTS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence SSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVAR
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TS
SSS

GGGSS
TSTT
-
TT




SSS
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence IKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKKKNIEKMYERMYAALGDPKAPGLGAFRRK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) S
GGGS


TTSS

SS

 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence FIQTFGKEFDKHFGKGGSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRG
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) TSSS



S





SGGG




SSS


B
TT



SS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence KPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDS
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) S


S


B

SSS

TTS
T


SS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence ACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYAPPCEYKDWLTKMDVGAYMLM
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TT







SSS


S
S


T

T
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence YKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNF
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) T

S
S
B
STTTT




GGG
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence MVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLL
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)
TTT







TTTTTTTSSS



SS


TTTS
TTSST
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence TNTMDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGH
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SGGG

SSSSS

S


S



B
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence EKAPAFRDYVAVARDHNIRAQEPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXXX
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) SSSTT



TTTTS
SBS


SS
GGG








 .........3580.....
Sequence XXXXXXXXXXXXXXX
Predicted secondary structure






SS confidence














Known secondary structure (DSSP) T




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D