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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7nfcF_

Fold library idPDB HeaderMoleculeTitle
c7nfcF_4.14PDB header: dna binding proteinChain: F: PDB Molecule: dna-dependent protein kinase catalytic subunit,dna-


Added to library: Sat Aug 21 09:04:17 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIEFR
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Known secondary structure (DSSP)
S
SS

TS

TTTT
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence ECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDEFKI
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Known secondary structure (DSSP) TSS
GGGGGGST
SS
SSS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPKLPV
Predicted secondary structure












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Known secondary structure (DSSP) T
S


S
GGGGG


SS



TTSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLF
Predicted secondary structure







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Known secondary structure (DSSP) TTSS

S
ST




GGGTSGGGTTSSSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIINKELSIAIRGYGLFA
Predicted secondary structure


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Known secondary structure (DSSP) TTSS
T
SS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence GPCKVINAKDVDFMYVELIQRCKQMFLTQDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQIDS
Predicted secondary structure





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Known secondary structure (DSSP) S
TTTS




TT

S

GGGT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLPWKVPTYKDYVDLFRHLL
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Known secondary structure (DSSP)
SS

TTSS









TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SSDQMMDSILADSLNHLLYDEFVKSVLKIVEKLDLTLEIQANLHPAKPKDFSAFINLVEFCREILPEKQA
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Known secondary structure (DSSP) T


S







S
TTTS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence EFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGDPEKYSCFALFVKFGKEVAVKMKQ
Predicted secondary structure








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Known secondary structure (DSSP) TTTTTSTT
TT




GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence YKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNALEEWSIYIDRHVMQPYYK
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Known secondary structure (DSSP)

TTTTS
TS
GGGTGGG
S
GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence DILPCLDGYLKTSFNKVVLKHLKKTKNLSLEEIRIRVVQMLGSLGGQINKNLLMMKSYVAWDREKRLSFA
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Known secondary structure (DSSP) TGGGGTT
S



SSS

TTTTTT




GGG


TT
S
S
SS


 .........780.........790.........800.........810.........820.........830.........840
Sequence VPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQMPEGGQGAPPMYQLYKRT
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Known secondary structure (DSSP)


SS


GGGS
SSGGGS


SSTT

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIRE
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Known secondary structure (DSSP) SSS
TTSSSS
SSSTS
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence FLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVFEALV
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Known secondary structure (DSSP) S
SSSSSS
TT
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASLCLLDLVKWLLAH
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Known secondary structure (DSSP) TS
S
STS
S
B




TT

S


B
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPSGILAQPTSLQAT
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Known secondary structure (DSSP)
S
S
TTTSSSS
S
S
TTTTT
TTTTTTTTT

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMHDIIAAEKCFTSPQEGERYN
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Known secondary structure (DSSP) TTSS
TTSS

SSS

S

S




TTTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVN
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Known secondary structure (DSSP) S
GGGTTTTT
T
GGGGS


S
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVSACKQLHRAGLLHNILPSQ
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Known secondary structure (DSSP) STT

SSTTTTTT
S

SSTT
STT
SSSSS


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence STDLHHSVGTELLSLVYKGIASLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTSVIHFSHGEY
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Known secondary structure (DSSP) SSSS
GGG



SSSS


B


SS


B
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence FYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKK
Predicted secondary structure
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Known secondary structure (DSSP) TSSSGGGT



SS
STGGG
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence CDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPF
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Known secondary structure (DSSP)

SSSSTTS
S
SSTTSSSSSS
TTS
TTGGG
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVME
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Known secondary structure (DSSP)


SS
STTS
TTS

TTSSSSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ELFQSSFRRIARRGSCVTQVGLLESVYEMFRTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKT
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Known secondary structure (DSSP) SSS
TT

S
TTGGG

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FDTQITKKMGYYKILDVMYSRLPNELTKTLIKLCYDAFTENLERRRLYHCAAYNCAISVICCVFNELKFY
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Known secondary structure (DSSP)



T


TTSS
SS


 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence QRHECMAPLTALVKHMHRSLRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLL
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Known secondary structure (DSSP)


SSS




SSSTTS
TTTTTGGG
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence QLAASENGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTL
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Known secondary structure (DSSP) TT





SSS

TTSS


TTSS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence VECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVR
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Known secondary structure (DSSP)
SS



SS

S
SSS
TSSS
S


TT
S
SSSTT

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence YKEVYAAAAEVLGLILRYVMERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNA
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Known secondary structure (DSSP)
GGGGS


TTTTTTT
STT
GGGGGGG
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence VFFLLPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVEL
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Known secondary structure (DSSP) GGG

ST
SGGGGS
TTS

GGG

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence RELLNPVVEFVSHPSTTCREQMYNILMWIHDNYRDTDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFW
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Known secondary structure (DSSP) GGGTT
S




TS
SS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDW
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Known secondary structure (DSSP) STTTS
SSS

SSTTTTTTTSSTTSS
BS
SS
SSS








S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence RFRSTVLTGRTDLLRLRRRFMRDQEKLSLMYARKGVAEQKREKEIKSELKMKQDAQVVLYRSYRHGDLPD
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Known secondary structure (DSSP)

SS




TTT
TTTT
S










SS

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence IQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFP
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Known secondary structure (DSSP)


BTT
GGG


SS

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence PFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLLPPDVLRWVELAKLYRSIGEY
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Known secondary structure (DSSP) SGGGG


TT




TTT

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence DVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLA
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Known secondary structure (DSSP) SSS
SSTT

T

S
SS



S
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence EWKSLEYCSTASIDSEKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAILELHY
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Known secondary structure (DSSP)
TTSTTT

GGGSSTT



SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence SQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLS
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Known secondary structure (DSSP) TT
S
TT
TSSSS
GGG
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence SQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLDISSLIRSCKFSMKMKMIDSARKQN
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Known secondary structure (DSSP) S

TS


TTSS


T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence NFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSSYLSKNI
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Known secondary structure (DSSP)
SS

GGG
T
SSS
STTTTGGGGGGSTTS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGEDSEKVIAGLYQRAFQHLSEAVQAAE
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Known secondary structure (DSSP)
TT
S

T


T
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence EEAGVIDAYMTLADFCDQQLRKEEEAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTK
Predicted secondary structure








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Known secondary structure (DSSP)


S


S

TT
TTS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence EISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESTSTGHKNKEFVARIKS
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Known secondary structure (DSSP)
STT

S


GGGTTSSS


TTSTTT

TT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence KLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAVNKKNIEKMYERMYAALGDPKAPGLGAFRRKFI
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Known secondary structure (DSSP) STTS



SSSTTSS

SS

S
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence QTFGKEFDKHFGKGSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPL
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Known secondary structure (DSSP)




S





STTTTSSSSS
S
SSS




SS



SS


 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence PEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACS
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Known secondary structure (DSSP)
TT


B






B


SSS

BTTS
SS


T
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence QRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLDVGAYMLMY
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Known secondary structure (DSSP) TT






TT


S
TTS
SSSS


S
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence KGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFM
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Known secondary structure (DSSP) S

S
SSS

STT



SGGG
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence VAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLT
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Known secondary structure (DSSP) TTTT





SS
TTSS
SS




S


TT
SSS
SSSTTSGGGT
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence NTMDVFVKEPSFDWKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRA
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Known secondary structure (DSSP) TTSS
SSTTTTTT





SSSTT
SSGG
 .........3510.........3520.........3530.........3540.........3550.......
Sequence QEPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





















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Known secondary structure (DSSP) GTT
SS

TTS

GGG
S



TS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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