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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7n84X_

Fold library idPDB HeaderMoleculeTitle
c7n84X_11.60PDB header: translocaseChain: X: PDB Molecule: nucleoporin nup188;


Added to library: Sat Jan 29 08:50:12 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DRFNVVGKLISIISSVIQNYDIITASSLAHDYNNSLVQLKKFSDLKFILQILQILNLMILNTKVPVDIVN
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Known secondary structure (DSSP)

TT
TTTTSS




S

S



S



TTTGGGGGG
SSS



 .........80.........90.........100.........110.........120.........130.........140
Sequence QWFLQYQNQFVELISRISSLFTITTILILGLNTSIAQFLYMDTETFDTVNSALENHPMIHYSWSFILYYR
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Known secondary structure (DSSP)
SSSSSSSTT


TTS

SS






S
ST



TTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RALQSSESFDDSDITKFALFAESHDVLQKLNTLSEILSFDPVYTTVITVFLEFSLNFIPITASTSRVFAK
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Known secondary structure (DSSP) T
SSSS


TTSSS
STTTTS

SSGGGGGSSSSSTTTS


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IISKAPEQFIENFLTNDTFEKKLSIIKAKLPLLIPLINLALEILSYLSASIIQVIFEIFEISLQRKDYTS
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Known secondary structure (DSSP) SS

SSSS

SSSS

S
SSSSSSS
SS




TTSSS





TS
SS


GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence IVQCCEFMTMLTPNYLHLVSSYLNKSDLLDKYGKTGLSNMILGSVELSTGDYTFTIQLLKLTKVFIRESL
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Known secondary structure (DSSP) TTTTSSSTTSSSTT

TTTTT
SSS
SSSSSTTTTSSSSSS
SSTTTTTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SLKNIHISKRSKIDIINKLILHAIHIFESYYNWKYNNFLQKFEIAFHLTLIFYDVLHDVFTILIISSSAN
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Known secondary structure (DSSP) S

SSS

TTTTTTTTSS
S


STTSS
SSSSSSSSTTTSSSS






SSST
 .........430.........440.........450.........460.........470.........480.........490
Sequence KLLQLFLTPMDSIDLAPNTLTNILISPLNTTTKILGDKILGNLYSKVMNNSFKLCTLLIAIRGSNRDLKP
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Known secondary structure (DSSP) TTTTTSTTSS
SSSTTS
SSS

STTTTSS

SS

STTT
SS





 .........500.........510.........520.........530.........540.........550.........560
Sequence SNLEKLLFINSSKLVDVYTYVHFKVQIIELLSYLVEAPWNDDYPFLLSFLGEAKSMAFLKEVLSDLSSPV
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Known secondary structure (DSSP) STTSSS
SS
SGGG






S
SSSSTS

TTTTS



SSS

SSS




SSTTTS
S
TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence QDWNLLRSLYIFFTTLLESKQDGLSILFLTGQFASNKKINDESSIDKKSSILTVLQKNSLLLDSTPEEVS
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Known secondary structure (DSSP) SS



TTTTS
STTTTTTSSSS
SSSS



SSS
SSSSSS
SSSGGG

SS
STTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence CKLLETITYVLNTWTNSKIFIKDPKFVNSLLAKLKDSKKLFQKKENLTRDETVSLIKKYKLISRIVEIFA
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Known secondary structure (DSSP) TTTGGGG
TTT
SSS


SS
S

S

S





STTTTS

SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LCIYNSTDSNSEILNFLNKTFHDELNLKFKEKGYDIPLLDIVLKADRSWNEPSKSQTNFKEEITDASLNL
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Known secondary structure (DSSP)

S












S










SSSSSSGGG

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence QYVNYEISTAKAWGALITTFVKRSTVPLNDGFVDLVEHFLKLNIDFGFTQIYLERIELSFYILYSFKIIE
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Known secondary structure (DSSP) S


TTSSGGGSSSS
S


TTSTTTTT


 .........850.........860.........870.........880.........890.........900.........910
Sequence LMNKIFTIFKSGELKNNFYRPLLRSVLVLLELVISDQLLEFFELVFSKGVYLILSEQDLLLLLSLFKKIT
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Known secondary structure (DSSP) TS
S




SS
TT



TTSSSSTGGGGS




S
 .........920.........930.........940.........950.........960.........970.........980
Sequence NVNPSKNFNVILASSLNEVGTLKVILNLYSSAHLIRINDEPILGQITLTFISELCSIEPIAAKLINSGLY
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Known secondary structure (DSSP) SSS
SS
SS
SSSTT


SSS



TTTTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SVLLESPLSVAIQQGDIKPEFSPRLHNIWSNGLLSIVLLLLSQFGIKVLPETCLFVSYFGKQIKSTIYNW
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Known secondary structure (DSSP) T
S
SSSSSSSS

SSS
TTTTTTT

SSSTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GDNKLAVSSSLIKETNQLVLLQKMLNLLNYQHDKKRLSAALSKFLTHPKYLNSRIIPTTLEEQQQLERLE
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Known secondary structure (DSSP)
S


SB




TS
B


STT



 .........1130.......
Sequence FVKGISRDIKALQDSLF
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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