PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7n78A_

Fold library id	PDB Header	Molecule	Title
c7n78A_	3.00	PDB header: transport protein	Chain: A: PDB Molecule: isoform 3 of polyamine-transporting atpase 13a2;

Links to external resources
Added to library: Sat Nov 13 09:48:20 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V R L S G Y C G S P W R V I G Y H V V V W M M A G I P L L L F R W K P L W G V R L R L R P C N L A H A E T L V I E I W Q L F T V Q V Q T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
B
T S
S
S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L R Y Y L F Q G Q R Y I W I E T Q Q A F Y Q V S L L D H G R S C D D V H R S R H G L S L Q D Q M V R K A I Y G P N V I S I P V K S Y P Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T G G G S S T T
B T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V D E A L N P Y Y G F Q A F S I A L W L A D H Y Y W Y A L C I F L I S S I S I C L S L Y K T R K Q S Q T L R D M V K L S M R V C V C R P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G E E E W V D S S E L V P G D C L V L P Q E G G L M P C D A A L V A G E C M V N E S S L T G E S I P V L K T A L P E G L G P Y C A E T H R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
T T
S S
B
S S
T T T T S
S
S S S B
T T T S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence H T L F C G T L I L Q A R A Y V G P H V L A V V T R T G F C T A K G G L V S S I L H P F Y K H S M K F V A A L S V L A L L G T I Y S I F I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S S S S
G G G S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence Y R N R V P L N E I V I R A L D L V T V V V P P A L P A A M T V C T L Y A Q S R L R R Q G I F C I H P L R I N L G G K L Q L V C F D K T G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T S S G G G S G G G G S
S
B T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence L T E D G L D V M G V V P L K G Q A F L P L V P E P R R L P V G P L L R A L A T C H A L S R L Q D T P V G D P M D L K M V E S T G W V L E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
S S
T T
B S S G G G S
S S S S
T T S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence S A F G T Q V P V P V S V L H R F P F S S A L Q R M S V V V A W P G A T Q P E A Y V K G S P E L V A G L C N P E T V P T D F A Q M L Q S Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T T
T T
S S
T T B
T T T S
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence A A G Y R V V A L A S K P L P T V P S L E A A Q Q L T R D T V E G D L S L L G L L V M R N L L K P Q T T P V I Q A L R R T R I R A V M V T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
S
T T
S S S B
B
T T T T
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D N L Q T A V T V A R G C G M V A P Q E H L I I V H A T H P E R G Q P A S L E F L P M E S R S R H L A L S G P T F G I I V K H F P K L L P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S
T T S
T T S
T T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence V L V Q G T V F A R M A P E Q K T E L V C E L Q K L Q Y C V G M C G D G A N D C G A L K A A D V G I S L S Q A E A S V V S P F T S S M A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S G G G S S
S S S S T T T S S S S S S T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E C V P M V I R E G R C S L D T S F S V F K Y M A L Y S L T Q F I S V L I L Y T I N T N L G D L Q F L A I D L V I T T T V A V L M S R T G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T T T
B

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence A L V L G R V R P P G A L L S V P V L S S L L L Q M V L V T G V Q L G G Y F L T L A Q P W F V P L N R T V A A P D N L P N Y E N T V V F S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T
S S
T T S
T T S S
S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence S S F Q Y L I L A A A V S K G A P F R R P L Y T N V P F L V A L A L L S S V L V G L V L V P G L L Q G P L A L R N I T D T G F K L L L L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T B
G G G
S S T T S S T T T T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030

Sequence V T L N F V G A F M L E S V L D Q C L P A C L R R L R P K R A S K K R F K Q L E R E L A E Q P W P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	R	L	S	G	Y	C	G	S	P	W	R	V	I	G	Y	H	V	V	V	W	M	M	A	G	I	P	L	L	L	F	R	W	K	P	L	W	G	V	R	L	R	L	R	P	C	N	L	A	H	A	E	T	L	V	I	E	I	W	Q	L	F	T	V	Q	V	Q	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B			B																	T	S		S																		S					T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	R	Y	Y	L	F	Q	G	Q	R	Y	I	W	I	E	T	Q	Q	A	F	Y	Q	V	S	L	L	D	H	G	R	S	C	D	D	V	H	R	S	R	H	G	L	S	L	Q	D	Q	M	V	R	K	A	I	Y	G	P	N	V	I	S	I	P	V	K	S	Y	P	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T							T	T	T	T					G	G	G	S	S	T	T		B							T	T	S																	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	D	E	A	L	N	P	Y	Y	G	F	Q	A	F	S	I	A	L	W	L	A	D	H	Y	Y	W	Y	A	L	C	I	F	L	I	S	S	I	S	I	C	L	S	L	Y	K	T	R	K	Q	S	Q	T	L	R	D	M	V	K	L	S	M	R	V	C	V	C	R	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T																T	T	T																																		S											T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	E	E	E	W	V	D	S	S	E	L	V	P	G	D	C	L	V	L	P	Q	E	G	G	L	M	P	C	D	A	A	L	V	A	G	E	C	M	V	N	E	S	S	L	T	G	E	S	I	P	V	L	K	T	A	L	P	E	G	L	G	P	Y	C	A	E	T	H	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							G	G	G			T	T							S	S			B			S							S							T	T	T	T	S			S										S	S	S	B			T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	H	T	L	F	C	G	T	L	I	L	Q	A	R	A	Y	V	G	P	H	V	L	A	V	V	T	R	T	G	F	C	T	A	K	G	G	L	V	S	S	I	L	H	P	F	Y	K	H	S	M	K	F	V	A	A	L	S	V	L	A	L	L	G	T	I	Y	S	I	F	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				T	T									S	S	S	S	S									G	G	G	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	Y	R	N	R	V	P	L	N	E	I	V	I	R	A	L	D	L	V	T	V	V	V	P	P	A	L	P	A	A	M	T	V	C	T	L	Y	A	Q	S	R	L	R	R	Q	G	I	F	C	I	H	P	L	R	I	N	L	G	G	K	L	Q	L	V	C	F	D	K	T	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																		S		T	T																				T				S	S	G	G	G	S	G	G	G	G	S		S							B	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	L	T	E	D	G	L	D	V	M	G	V	V	P	L	K	G	Q	A	F	L	P	L	V	P	E	P	R	R	L	P	V	G	P	L	L	R	A	L	A	T	C	H	A	L	S	R	L	Q	D	T	P	V	G	D	P	M	D	L	K	M	V	E	S	T	G	W	V	L	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	B		S	S											T	T						B	S	S	G	G	G	S		S	S									S	S						T	T				S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	S	A	F	G	T	Q	V	P	V	P	V	S	V	L	H	R	F	P	F	S	S	A	L	Q	R	M	S	V	V	V	A	W	P	G	A	T	Q	P	E	A	Y	V	K	G	S	P	E	L	V	A	G	L	C	N	P	E	T	V	P	T	D	F	A	Q	M	L	Q	S	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				B	T	T	T	T									T	T		S	S														T	T	B		T	T	T	S		T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	A	A	G	Y	R	V	V	A	L	A	S	K	P	L	P	T	V	P	S	L	E	A	A	Q	Q	L	T	R	D	T	V	E	G	D	L	S	L	L	G	L	L	V	M	R	N	L	L	K	P	Q	T	T	P	V	I	Q	A	L	R	R	T	R	I	R	A	V	M	V	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T													S		S						T	T							S	S	S	B												B		T	T											T	T								S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	N	L	Q	T	A	V	T	V	A	R	G	C	G	M	V	A	P	Q	E	H	L	I	I	V	H	A	T	H	P	E	R	G	Q	P	A	S	L	E	F	L	P	M	E	S	R	S	R	H	L	A	L	S	G	P	T	F	G	I	I	V	K	H	F	P	K	L	L	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T	T	S	S		T	T	S												T	T	S																															T	T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	L	V	Q	G	T	V	F	A	R	M	A	P	E	Q	K	T	E	L	V	C	E	L	Q	K	L	Q	Y	C	V	G	M	C	G	D	G	A	N	D	C	G	A	L	K	A	A	D	V	G	I	S	L	S	Q	A	E	A	S	V	V	S	P	F	T	S	S	M	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S															T	T	T									S	G	G	G							S	S							S	S	S	S	T	T	T	S	S				S	S	S	S	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	C	V	P	M	V	I	R	E	G	R	C	S	L	D	T	S	F	S	V	F	K	Y	M	A	L	Y	S	L	T	Q	F	I	S	V	L	I	L	Y	T	I	N	T	N	L	G	D	L	Q	F	L	A	I	D	L	V	I	T	T	T	V	A	V	L	M	S	R	T	G	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																																							T	T	T													T											T	T			B
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	A	L	V	L	G	R	V	R	P	P	G	A	L	L	S	V	P	V	L	S	S	L	L	L	Q	M	V	L	V	T	G	V	Q	L	G	G	Y	F	L	T	L	A	Q	P	W	F	V	P	L	N	R	T	V	A	A	P	D	N	L	P	N	Y	E	N	T	V	V	F	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S			S							T	T																												T		S	S						T	T	S		T	T	S	S		S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	S	S	F	Q	Y	L	I	L	A	A	A	V	S	K	G	A	P	F	R	R	P	L	Y	T	N	V	P	F	L	V	A	L	A	L	L	S	S	V	L	V	G	L	V	L	V	P	G	L	L	Q	G	P	L	A	L	R	N	I	T	D	T	G	F	K	L	L	L	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	B			G	G	G																				S	S	T	T	S	S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030
Sequence	V	T	L	N	F	V	G	A	F	M	L	E	S	V	L	D	Q	C	L	P	A	C	L	R	R	L	R	P	K	R	A	S	K	K	R	F	K	Q	L	E	R	E	L	A	E	Q	P	W	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											S				S		S	S												S		S