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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7n4yA_

Fold library idPDB HeaderMoleculeTitle
c7n4yA_2.61PDB header: hormoneChain: A: PDB Molecule: thyroglobulin;


Added to library: Sat Nov 13 09:46:58 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIFEQVDAQPLRPCELQRERAFLKREDYVPQCAEDGSFQTVQCGKDGASCWCVDADGREVPGSRQPGRPA
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Known secondary structure (DSSP)
B



SS



TT
S



B
TTS
B
S
GGGSB
TTS
B
TT

S

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence ACLSFCQLQKQQILLSSYINSTATSYLPQCQDSGDYSPVQCDLRRRQCWCVDAEGMEVYGTRQQGRPARC
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Known secondary structure (DSSP)



S








B
TTSSB
S
TTS
B
TTS
B
TT

S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PRSCEIRNRRLLHGVGDRSPPQCSPDGAFRPVQCKFVNTTDMMIFDLVHSYSRFPDAFVTFSSFRSRFPE
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Known secondary structure (DSSP)

TT
S
S



B
TTSSB
STTTT


GGGGS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VSGYCYCADSQGRELAETGLELLLDEIYDTIFAGLDLASTFAETTLYRILQRRFLAVQLVISGRFRCPTK
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Known secondary structure (DSSP) B
TTS
BBTT



TT



S


SS

SSGGGSS
SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence CEVERFAATSFRHPYVPSCHPDGEYQAAQCQQGGPCWCVDSRGQEIPGTRQRGEPPSCAEDQSCPSERRR
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Known secondary structure (DSSP) T
S



B
TTS
B
S
TTS
B
TTS
B
TT

BSSS







 .........360.........370.........380.........390.........400.........410.........420
Sequence AFSRLRFGPSGYFSASCPPSIKELFLDSGIFQPMLQGRDTRFVAPESLLKEAIRGLFPSRELARLALQFT
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Known secondary structure (DSSP) TT
SSS






TTTTTT
SB
SSS

B


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TNAKRLQQNLFGGRFLVNVGQFNLSGALGTRGTFNFSHFFQQLGLPGFQDKPVVGSFGFEVNLQENQNAL
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Known secondary structure (DSSP) SSGGGTSST

TTTB
S
SSS
T

S





B
GGG
B

 .........500.........510.........520.........530.........540.........550.........560
Sequence QFLSSFLELPEFLLFLQHAISVPEDIARDLGDVMEMVFSSQGCGSLFVPACTAEGSYEEVQCFAGDCWCV
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Known secondary structure (DSSP) TT
TS
TTT
SSTSS







B
TTS
B
STTB
 .........570.........580.........590.........600.........610.........620.........630
Sequence DAQGRELAGSRVRGGRPRCPTECEKQRARMQSLLGSQPAGSSLFVPACTSKGNFLPVQCFNSECYCVDTE
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Known secondary structure (DSSP)
TT

B
TTT
TS





SSTTTS
TT






B
TTS
B
SSSSB
TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence GQPIPGTRSALGEPKKCPSPCQLQAERAFLGTVRTLVYIPQCSASGQWSPVQCDGPPEAHFDLRSCWCVD
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Known secondary structure (DSSP) S
B
TT

TTS












GGG


S
SS






S


 .........710.........720.........730.........740.........750.........760.........770
Sequence EAGQKLCPGSCEEVKLRVLQFIREAEEIVTYSNSSRFPLGESFLAAKGIRLTDEELAFPPLSPSRETFLE
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Known secondary structure (DSSP) TTS





TT
S
TTTT



T



SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence KFLSGSDYAIRLAAQSTFDFYQRRLVTLAESPRAPSPVWSSAYLPQCDAFGGWEPVQCHAATGHCWCVDG
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Known secondary structure (DSSP) S
S

S




TT
SS



B
TTS
B
STTTTB
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence KGEYVPTSLTARSRQIPQCPTSCERLRASGLLSSWKQAGVQAEPSPKDLFIPTCLETGEFARLQASEAGT
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Known secondary structure (DSSP) TS
B
TT

S
SS







BSSSSS

GGG


B
TTS
B
S
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence WCVDPASGEGVPPGQCPSLCEVLQSPGYSPACRAEDGGFSPVQCDPAQGSCWCVLGSGEEVPGTRVAGSQ
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Known secondary structure (DSSP)
BTTBTT











S


B
TTT

B
S
SSS

B
SSS
B
TT


SSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PACESPQCPLPFSVADVAGGAILCERASGAAGQRCQLRCSQGYRSAFPPEPLLCSVQRRRWESRPPQPRA
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Known secondary structure (DSSP)
S
B

SS

TTS
SS
SSS
S









TT
SS



B
TTTTSSS


TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CQRPQFWQTLQTQAQFQLLDYSGLLLAFQVFLLDELTARGFCQIQVKTAGTPVSIPVCDDSSVKVECLSR
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Known secondary structure (DSSP)





SS
TTT
S


SSS




TTST
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ERLGVNITWKLQLVDAPPASLPDLQDVEEALAGKYLAGRFADLIQSGTFQLHLDSKTFSADTSIRFLQGD
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Known secondary structure (DSSP) TTTTS
TTTS
SSSTTTT

TT
SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RFGISPRTQFGCLEGFGRVVAASDASQDALGCVKCPEGSYFQDEQCIPCPAGFYQEQAGSLACVPCPEGR
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Known secondary structure (DSSP) S
BSS




TT
S
SGGGGT
S

TTTT

TT

SSS
SS


TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TTVYAGAFSQTHCVTDCQKNEVGLQCDQDGQYRASQRDRTSGKAFCVDGEGRRLPWTEAEAPLVDAQCLV
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Known secondary structure (DSSP) B
SSS
B
SGGG
B


S


B
GGG
B
S
SSS

B
SSS
B
SS

BSS


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence MRKFEKLPESKVIFSADVAVMVRSEVPGSLMQCLADCALDEACGFLTVSTEVSCDFYAWASDSIACTTSG
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Known secondary structure (DSSP) T

GGG














TTSS





TTS



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RATSFGSLQCQVKVRSREGDPLAVYLKKGQEFTITGQKRFEQTGFQSALSGMYSPVTFSASGASLAEVHL
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Known secondary structure (DSSP)






S
S
SS

SSSSSTTTT

B

BSS
S


TTT

 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence FCLLACDHDSCCDGFILVQVQGGPLLCGLLSSPDVLLCHVRDWRDPAEAQANASCPGVTYDQDSRQVTLR
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Known secondary structure (DSSP) TTSS


TTS
SS
S

BTT



TT

TTTT
SSS
TTSSS


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LGGQEIRGLTPTSFQQVYLWKDSDMGSRSESMGCRDLTTGLFSPVDLIQVIVDGNVSLPSQQHWLFKHLF
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Known secondary structure (DSSP)
TT

B






TT

SSS

GGGT



SGGG

GGG
TT




B

TTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SLQQANLWCLSRCAGEPSFCQLAEVTDSEPLYFTCTLYPEAQVCDDILESSPKGCRLILPRRPSALYRKK
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Known secondary structure (DSSP)
T
TTT
S

SSSS



S


SS
SS
SS

S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VVLQDRVKNFYNRLPFQKLTGISIRNKVPMSDKSISSGFFECERLCDMDPCCTGFGFLNVSQLKGGEVTC
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Known secondary structure (DSSP)



SS
SS


SS

TTS

TT

SGGGT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LTLNSLGLQTCSEEGGVWRILDCGSPDTEVRTYPFGWYQKPVSPSDAPSFCPSVALPALTENVALDSWQS
Predicted secondary structure

















































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Known secondary structure (DSSP)





S


S



TT

STT




SS


TTS







SS


SSSS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LALSSVIVDPSIRNFDVAHISTAAVGNFSAARDRCLWECSRHQDCLVTTLQTQPGAVRCMFYADTQSCTH
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Known secondary structure (DSSP)

GGG
TT

STTSSSS
TT


SS



 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence SLQAQNCRLLLHEEATYIYRKPNIPLPGFGTSSPSVPIATHGQLLGRSQAIQVGTSWKPVDQFLGVPYAA
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Known secondary structure (DSSP)
SS

SS

S





TT
SSSS
TTT
TT
S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence PPLGEKRFRAPEHLNWTGSWEATKPRARCWQPGIRTPTPPGVSEDCLYLNVFVPQNMPPNASVLVFFHNA
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Known secondary structure (DSSP)


GGGTTS








BS


B


TT

SS

TTB
S


SS

SS


 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence AEGKGSGDRPAVDGSFLAAVGNLIVVTASYRTGIFGFLSSGSSELSGNWGLLDQVVALTWVQTHIQAFGG
Predicted secondary structure
































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Known secondary structure (DSSP)

SSS
SSS
SS
TTS






SBTTB


GGGTT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence DPRRVTLAADRGGADIASIHLVTTRAANSRLFRRAVLMGGSALSPAAVIRPERARQQAAALAKEVGCPSS
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Known secondary structure (DSSP) TGGGGG
TT

SS

TT
TTSS

T


S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SVQEMVSCLRQEPARILNDAQTKLLAVSGPFHYWGPVVDGQYLRETPARVLQRAPRVKVDLLIGSSQDDG
Predicted secondary structure































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Known secondary structure (DSSP)
TTS

TTTT








SSS

S
S

SS

TT

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LINRAKAVKQFEESQGRTSSKTAFYQALQNSLGGEAADAGVQAAATWYYSLEHDSDDASFSRALEQATRD
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Known secondary structure (DSSP) TTT




SSS

T

TT



 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence YFIICPVIDMASHWARTVRGNVFMYHAPESYSHSSLELLTDVLYAFGLPFYPAYEGQFTLEEKSLSLKIM
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Known secondary structure (DSSP) TTT
S




S
TTSSS
TTGGG
GGGTTSS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence QYFSNFIRSGNPNYPHEFSRRAPEFAAPWPDFVPRDGAESYKELSVLLPNRQGLKKADCSFWSKYIQSLK
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Known secondary structure (DSSP) SSTT
S
TT





SS







STT


STT


TTTT
 ..
Sequence AS
Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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