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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7mvzA_

Fold library idPDB HeaderMoleculeTitle
c7mvzA_2.81PDB header: transport proteinChain: A: PDB Molecule: nucleoporin nup188;


Added to library: Wed Jun 22 17:37:45 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TLTDRTYLPPLEDCLTGRTVILSWRLVASALEDADLARLTSPALSTFLRDGFVHELLKHPARVFEPKDLK
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Known secondary structure (DSSP)


STTTS

TSS



T
T
S
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence QEFETKTSSGVDTIKKDALWLADAVAINQVAALRIVLIEYQTRAHSHLVLPLSTQDVANIQEAAGILSLL
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Known secondary structure (DSSP)



SSS
TTS


T





 .........150.........160.........170.........180.........190.........200.........210
Sequence NPASAVDAETMWCDFETEARRRERILATYLSERRSFTAAVDALVTFLLHSAPGQHKDLDSLRRALLKDAF
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Known secondary structure (DSSP)
TTT


TSS

TT

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence AFDEDLDVPDRSKLLTMAPTYMNLVEDCIARAQALPAKLGESFKTEAFELDWLRTAITEAVHSLSIAFQA
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Known secondary structure (DSSP)


TTSSS


TTS

SSS
TTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence LDLDTPYFAPHELLSEWFELMNSSLFLESILGFEVVADLAMPARSLVSAICLKMLNIDRTIQFLHDFDYP
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Known secondary structure (DSSP) TT
SS


TTT
STT
T



 .........360.........370.........380.........390.........400.........410.........420
Sequence DGEEPYLLSSQTLNKIHTAVTNAVNSGVAASLPVAFAWSLIVHQMHLGYQERASPYDDFLREQRLDNDIA
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Known secondary structure (DSSP) SS


GGG
T
STT

TT
SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence PVEQIAMLATSRGQVYQVMSEMALCLGTTHEAAFRPAVGARARLVFQDLLKRSAYLIPYQDEPVFSLLAI
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Known secondary structure (DSSP) GGGTSSSTT
SS
TTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence LATGRQYWDVTDALSASSLNQVYTDMLDDETLFTQFTMQAINRFPYEFNPFSVLCRVLAAALITNKDKAD
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Known secondary structure (DSSP) TT

GGG






SSTTS
BSSSSS
GGGSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VVTGWLWRTPTLTVDWNPAWDRSYELCFEDENTNSFRLTRDVDLFGERFIIPEGTLGRFVTTARLEFEHS
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Known secondary structure (DSSP) SBS



GGGGGS


S
TTTT

S

BTT



B

TT







B
 .........640.........650.........660.........670.........680.........690.........700
Sequence ALALLGKRLEVKAAEEICDSGMAPLDVDEQAEAVAMLATVLRAESLKSTAKGGDPEAPLKFLKEASRLLP
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Known secondary structure (DSSP) TT


TTS




STTS
TTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence HNKDILTVISDTIDGLVEKELLELDGPQIAVLASCLQFLHAALAVCPGRVWAYMSRCALIAGDARPGRLS
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Known secondary structure (DSSP) TT

TSS
TTS


TT
SSSS

SSS

GG
 .........780.........790.........800.........810.........820.........830.........840
Sequence RITGSLDMYAERFDLLSSAVKLFAALIDSAACSAVPWLGTSEKILSRVALAIAQAALDVYESTTTWRFRS
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Known secondary structure (DSSP) GG
SS









TT

TTT


SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ELDRSILVRDVVGLMHKLVVHAHTLSSHLTSTLSPAAAHIISSFLTPPPSASSLRFQPLLGTLLVALITP
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Known secondary structure (DSSP) S

SGGG
TTS

SSSTTTTTT

 .........920.........930.........940.........950.........960.........970.........980
Sequence RATLYPGQSRILAERVTSVLAFCTSLLRAADFLGQTHIPLQTHLFQSACLLARLPAANAVYRAPVLELLR
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Known secondary structure (DSSP)

SS
TTT
S

TTTGGGT
GGG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ALVEVAGRAEPPSLLGYLGSHAARSFISLVEGIDKPFGRVEHAVVTWRFFAAVIRNRQQWMAGCLLTGRV
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Known secondary structure (DSSP)






SS
STTT

SSS




 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GEGSVLAAAMERLREVKSLDVQEAVAVMDFVVSAQNYWPWTIFAVRKEKEVVDALRGYVRGLKAPGMVMK
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Known secondary structure (DSSP)
SSSTTTTTS
STT

S

SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence TDGAAAAAFQARIAAYVAETFAMQLYHMRQMRQAEKFAGELVADLDYFLREGVMVWGYNASLHGNFARNF
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Known secondary structure (DSSP) SS
SST

GGGTSS


TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence AKRFPGVEVDDFKRTMWLPRELGKGYYYALEVAEQMLGFDAGWGGVKQSGFRKEMETANLNLSLVEAQVS
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Known secondary structure (DSSP)
SSS
SGGGB

SSS


SSTTSSB
STTSTTSS
GGG
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LFHAWEYLLLELTLSLLPKKENAAFARQVLQVVEQCLEANQRSQPPENIFVVLGHARAGLALTLLQRLAD
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Known secondary structure (DSSP) T
SSSSS



TTTS


TTTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ANQLPRDVTHLLALVSSAIHAVENPFGANDLPYFRTLLKILFVVLRAAKQGVAITQQVLTILDRVVARCF
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Known secondary structure (DSSP) T




TS


TTSS


TTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RALAALVHTAPEDLALITAILQACLSVPGIEQCQVQVLNIMAAHDVFQVAVALFSPVYGELALLFLLELS
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Known secondary structure (DSSP)

TTSGGGTTTTT

T
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence ALPALAEHLACDGLLGHLAAARLAGYMRRTNVGPFAENAGAARCYAIWAKCLLPLLLNILAALGSTVAPE
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Known secondary structure (DSSP) TSS
TTSTT

SS
SST
STTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VAWVLNQFPNLLQSSVERIEPLLEISEIHSLALLTRVLAACRAQNARDVPEVTWDGAKVLECVEYWLKVL
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Known secondary structure (DSSP)




TT
SSS






ST

GG
 .........1620.........1630.........1640.
Sequence RERLVPLGPREVNRLEEKAVGLLVGVREVLE
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Known secondary structure (DSSP) GGG


SS





ST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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