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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7mtdC_

Fold library idPDB HeaderMoleculeTitle
c7mtdC_3.50PDB header: viral proteinChain: C: PDB Molecule: spike glycoprotein;


Added to library: Sat Sep 18 08:46:15 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFNPVLPFNDGVYFASTRGWIFGTTQSLLIVNV
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Known secondary structure (DSSP)

B

SS


B

SS


SS

S

SS

B






SS





S






 .........80.........90.........100.........110.........120.........130.........140
Sequence VIKVNNCTFEYVNLREFVFKNIDGYFKIYSKHTPLPQGFSALEPLVDLPIGINITRFQTLAYYVGYLQPR
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Known secondary structure (DSSP)



S



TT



S



B











 .........150.........160.........170.........180.........190.........200.........210
Sequence TFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPFKCYGVSPTKLND
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Known secondary structure (DSSP)

SSS
SSSST
S


S










SSS
SGGGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence LCFTNVYADSFPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDP
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Known secondary structure (DSSP)


S








SS










SS
SSS






TT





TT




S
 .........290.........300.........310.........320.........330.........340.........350
Sequence QTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPNVFQTRAGCLIGAEHVNNSYECDIPIGA
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Known secondary structure (DSSP) SSS





TTT



T

TTS



SSS

S




S
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GICASYQQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNL
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Known secondary structure (DSSP) S














SS







STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLL
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Known secondary structure (DSSP) GGG
SSSS


SS




S


STT


TTTS

SSSSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence FNKVTKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYE
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Known secondary structure (DSSP)



TT


SS
SS
TTTSS




T

T
 .........570.........580.........590.........600.........610.........620.........630
Sequence NQKLIANQFNSAIGKIQDSLSSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEV
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Known secondary structure (DSSP) S



TTS

TTSS
S
S
STTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVV
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Known secondary structure (DSSP) TTSS


STTTSSSSS

B


TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence FLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIG
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Known secondary structure (DSSP)

S
SSSSSSSSS

SSS


B


TTTTTSSTT
 .........780...
Sequence IVNNTVYDPLQPE
Predicted secondary structure








SS confidence












Known secondary structure (DSSP)





TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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