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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7m4qB_

Fold library idPDB HeaderMoleculeTitle
c7m4qB_2.87PDB header: membrane proteinChain: B: PDB Molecule: efflux pump membrane transporter;


Added to library: Sat May 22 09:18:29 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MAQFFIHRPIFAWVIALVIMLAGILTLTKMPIAQYPTIAPPTVTIAATYPGASAETVENTVTQIIEQQMN
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Known secondary structure (DSSP)
T


B
SS


S


TT

TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence GLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQNKLQSATALLPEDVQRQGVTVTKSGASFLQVI
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Known secondary structure (DSSP) S
TTTTS
TT

TTS







S
 .........150.........160.........170.........180.........190.........200.........210
Sequence AFYSPDNNLSDSDIKDYVNSSIKEPLSRVAGVGEVQVFGGSYAMRIWLDPAKLTSYQLTPSDIATALQAQ
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Known secondary structure (DSSP)
TTS
S
TTSTTS


TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NSQVAVGQLGGAPAVQGQVLNATVNAQSLLQTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNYQFDSK
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Known secondary structure (DSSP) S


T
SS

TT






S

ST

TT

GGGT
TTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence FNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRLSIESVVHTLIEAVIL
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Known secondary structure (DSSP) TT

TT

TT

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence VFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM
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Known secondary structure (DSSP) S

TT

BS
 .........430.........440.........450.........460.........470.........480.........490
Sequence SEDHTDPVTATSRSMQQISGALVGITSVLTAVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTP
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Known secondary structure (DSSP)


GGGGS

 .........500.........510.........520.........530.........540.........550.........560
Sequence ALCATILKQHDPNKEPSNNIFARFFRSFNNGFDRMSHSYQNGVSRMLKGKIFSGVLYAVVVALLVFLFQK
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Known secondary structure (DSSP)




TT


TT
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LPSSFLPEEDQGVVMTLVQLPPNATLDRTGKVIDTMTNFFMNEKDTVESIFTVSGFSFTGVGQNAGIGFV
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Known secondary structure (DSSP) S
B
SS




S

TT


TTTSS

SSS

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KLKDWSKRTTPETQIGSLIQRGMALNMIIKDASYVMPLQLPAMPELGVTAGFNLQLKDSSGQGHEKLIAA
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Known secondary structure (DSSP)

TTT

SGGGSTT

S

B



SS
TTSSS

S
S

 .........710.........720.........730.........740.........750.........760.........770
Sequence RNTILGLASQDKRLVGVRPNGQEDTPQYQINVDQAQAGAMGVSIAEINNTMRIAWGGSYINDFVDRGRVK
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Known secondary structure (DSSP) T
TT
S



T


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence KVYVQGDAGSRMMPEDLNKWYVRNNKGEMVPFSAFATGEWTYGSPRLERYNGVSSVNIQGTPAPGVSSGD
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Known secondary structure (DSSP)
GGGGSSGGGGGG

SSS
GGGT
STT
TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence AMKAMEEIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVV
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Known secondary structure (DSSP) STTTT

S
TTTT
SSTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence PLGVIGAIVLTYLGMIIKGDPNLSNNIYFQVAIIAVIGLSAKNAILIVEFAKELQEKGEDLLDATLHAAK
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Known secondary structure (DSSP) TT
TTSSB
T

 .........990.........1000.........1010.........1020.........1030.........1040.......
Sequence MRLRPIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYK
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Known secondary structure (DSSP) T

SSSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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