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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7m12B_

Fold library idPDB HeaderMoleculeTitle
c7m12B_4.00PDB header: viral proteinChain: B: PDB Molecule: capsid protein;


Added to library: Sat Apr 10 08:21:54 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SNPRLTKVLDEMSKKPCVNINEIRKMIRNFQPQFIQPRNGNRPNAQPRTVDSFEWVVRIQSTVETQLLGA
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Known secondary structure (DSSP)

S



TT


S
SSS


SS

SS


TT


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TNTVPQQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGSLQDTAQLQSPQYP
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Known secondary structure (DSSP) SS







S








TTTS




SSSSS
TTS




SSS




B
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLLAYLFGQLIAIKDRLDLFRPSNPLSLADALFGFTLAQNARPRYDDHRHAKACQGPLVIPAATNSDCGP
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Known secondary structure (DSSP)
S

SS



SS

SS


SSS
STT

S

S







SSBSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence CGFVQINANQGLTLPLGACLFVNPETVNDQSFQDFLWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPGRQ
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Known secondary structure (DSSP) S

TTS




SS
T
STTS
S


SS





 .........290.........300.........310.........320.........330.........340.........350
Sequence APHAGELTDERVRLALDTGHRILLSMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPL
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Known secondary structure (DSSP)


SSS

TTT

TTT



STT


TTTTS





 .........360.........370.........380.........390.........400.........410.........420
Sequence NGLYYYNGATSYVVSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVAAKVNASQIDAAMVFGPAVA
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Known secondary structure (DSSP) B
S
S


SS
TTSSS
TTT



SS

SS

B



TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence EGDGFVYDPLRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKTKIVNNKLRA
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Known secondary structure (DSSP) TTS

SSS



STTSSSTTGGG
T





S


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYNVLDELDYLFNGGDIRNCFGLNA
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Known secondary structure (DSSP) S
SS

SS



SSS

S

S
T

B
SS


S

TT

GGG
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence LNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVTQDAPLDEIYHWRDHGNLTRPYSCHILDSQGLE
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Known secondary structure (DSSP) TTTTT
GGGB
S


SSS



SSS



S
GGGTT




SS


TT

SS

 .........640.........650.........660.....
Sequence FADVSNGRSRGKILVVVNSPLKTCAAYQGPSFAPK
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Known secondary structure (DSSP)

B
SSSSSS

TT

SS
S
S
B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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