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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7lt3L_

Fold library idPDB HeaderMoleculeTitle
c7lt3L_4.60PDB header: dna binding protein/dnaChain: L: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Apr 17 09:22:16 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AGVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNS
Predicted secondary structure
















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Known secondary structure (DSSP)
TTS
S



TTT
SSSSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IEFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMD
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Known secondary structure (DSSP) STTTTTTTGGG

SSSSSGGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence EFKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREP
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Known secondary structure (DSSP) GG
TTSTT
S

GGGGTTTS
SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence KLPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTC
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Known secondary structure (DSSP)
TSS

SSSSTTT

SS

S

 .........290.........300.........310.........320.........330.........340.........350
Sequence LLDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSN
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Known secondary structure (DSSP) TT
S
TT
SSTTTT



 .........360.........370.........380.........390.........400.........410.........420
Sequence NKELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLD
Predicted secondary structure





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Known secondary structure (DSSP) T
T
SSS
TTTSTTTTT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence TVPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPV
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Known secondary structure (DSSP) S

TTTGGGS
T
T
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VLPTYKDYVDLFRHLLSSDQMMDSSESLNHLLYDEFVKSVLKIVEKLDLTLEIAANLHPAKPKDFSAFIN
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Known secondary structure (DSSP)



GGGG
T









TTS

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVPEKYSCFAL
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Known secondary structure (DSSP) SGGG

GGGGGGS
S
STT
GGG


 .........640.........650.........660.........670.........680.........690.........700
Sequence FVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNALEEW
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Known secondary structure (DSSP)

TTS
TTSTTSSTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence SIYIDRHVMQPYYKDILPCLDGYLKTSALEVSALSRAAQKGFNKVVLKHLKKTKEAISLEEIRIRVVQML
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Known secondary structure (DSSP) S
GGGSTT
TGGGS







SS




 .........780.........790.........800.........810.........820.........830.........840
Sequence GSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVA
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Known secondary structure (DSSP) T
GGGSSSSSSSTB
SSSS






SS



GGGT
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ACELLHSMVMFMLGKATQMPEGGQGAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNK
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Known secondary structure (DSSP) S
S


SSS
TTTT
S
TTSST
 .........920.........930.........940.........950.........960.........970.........980
Sequence KFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALH
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Known secondary structure (DSSP) TTTST
SS
S
TTS
SST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PNAFKRLGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIE
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Known secondary structure (DSSP) S
TTTGGGGTTTT
SS

SS
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KKHVSLNKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLK
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Known secondary structure (DSSP) TS
TTTT
TT




SS
SS




TS

SSGGGSTT


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence DVLKEEGVSFLINTFEGGGCGQPSGILAQPTLLYSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGT
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Known secondary structure (DSSP) SS
SSS
S






TTTTTTTTT
S



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence EAQSSLLKAVAFFLESIAMHDIIAAEKSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCN
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Known secondary structure (DSSP) SS

TSS
TTS




TTTSTTS


 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence THLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVN
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Known secondary structure (DSSP)
GGGTTGGG

SS
T

TS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LYGPDAQVDRSRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCLPSLDL
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Known secondary structure (DSSP)
S
S
T
S


SSSS
T

TTTT






 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTSVIHFSHGEYFYSLFSETINTELLKNLDLAVLELM
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Known secondary structure (DSSP) TSSS
S








TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKIL
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Known secondary structure (DSSP) T

S

SSS
STTTGGGGGGSS
SSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence QIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFP
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Known secondary structure (DSSP) TT
SSSSSSS

SSS
TTSTTSS
SS

S


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence MQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVT
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Known secondary structure (DSSP) S

TTS
TT


TTSSS
S
TTSS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence QVGLLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTF
Predicted secondary structure
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Known secondary structure (DSSP)





TTS
TTSS
TT

SSTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DTQITKKMGYYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQL
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Known secondary structure (DSSP) TTS
SSSB
S


SS

SS

BS

STTT



SS
S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRRYNFPVMDELNRHECMA
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Known secondary structure (DSSP) T

SSTTTT


SS
SS
SS











SSTTSTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence PLTALVKHMHRSLPRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASE
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Known secondary structure (DSSP) TT

TTT
STTS
TGGGGSSTTTTTSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence NNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECW
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Known secondary structure (DSSP)
SSSSSS




S


SSTTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence KDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEV
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Known secondary structure (DSSP)
SS







TT
ST


S
SS
SS
GGG

SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence YAAAAEVLGLILRYVMERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFL
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Known secondary structure (DSSP) TT
STT
TT
STT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELL
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Known secondary structure (DSSP) TTT

TTTT
TTTTTSS
TTTTS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence NPVVEFVSHPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFW
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Known secondary structure (DSSP) GGGGS


SS
S
S

GGG
SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence SHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDW
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Known secondary structure (DSSP) STTTS
SSGGG

GGGTTSTTSSSBSSSS
SSS







S
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence RFRSTVLTPMGRTDLLRLRRRFMRDQEKLSLMYARKGVAEQKREKEIKSELKMKQDAQVVLYRSYRHGDL
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Known secondary structure (DSSP)

SS
S
TT

TTGGGGG











S

SS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence PDIQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSF
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Known secondary structure (DSSP)




BT
GGGTS

SS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence FPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLPRLPPDVLRWVELAKLYRS
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Known secondary structure (DSSP)
TSTTS



TT




S

 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence IGEYDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCY
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Known secondary structure (DSSP) TT
TT
SS

TT
T
SS
SSS


 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence NHLAEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGE
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Known secondary structure (DSSP) TSS
TT
SSSS

GGGGGSSTSS


STSS
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFI
Predicted secondary structure






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Known secondary structure (DSSP)
TT
SS
TT
TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence SFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLTPISSLIRSCKFSMK
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Known secondary structure (DSSP) SS
TSST



TTTS
T


 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence MKMIDSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDE
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Known secondary structure (DSSP) TT
GGGTTSSS
SSTT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence NNVSSYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAGLYQ
Predicted secondary structure




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Known secondary structure (DSSP) GGG


SSGGGSTTTSTTS
SS

ST
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence RAFQHLSEAVQAAEEEAAGVIDAYMTLADFCDQQLRKEEENASVIDSAELQAYPALVVEKMLKALKLNSN
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Known secondary structure (DSSP) T



STTS

TTS

 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence EARLKFPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAI
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Known secondary structure (DSSP) TS
TTTTTT

TTTTSSGGGGTTS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence VYPFIISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKT
Predicted secondary structure
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Known secondary structure (DSSP) TT



SSSSGGGTTS
TTTS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence PVNKKNIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLK
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Known secondary structure (DSSP) GGGTTSTT
TT

TSTT
GGGGGGG

S

TT
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence MNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRII
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Known secondary structure (DSSP) TT




SSGGGST



SSS


B
SS


SSS


TTSS
B
S



SSS


 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence IRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENT
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Known secondary structure (DSSP) SSS



SS
TSTT






TT


TT
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence VTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVP
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Known secondary structure (DSSP) S
S
SSTTTTSTT

SSSST

TTS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence ADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSA
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Known secondary structure (DSSP) SSBSST

S


TTS
TTT




SS
TTTT
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence TQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKNWYPRQKICYAK
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Known secondary structure (DSSP) TSSTTS



SS


T
SS
SSSTTSGGGTGGGTT
TT


S
 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence RKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLSEETQVKCLMDQATDPNILG
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Known secondary structure (DSSP)
B

SSSS


SSS
TTTTS
SB



 .........3720
Sequence RTWEGWEPWM
Predicted secondary structure








SS confidence









Known secondary structure (DSSP) T

SSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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