PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7l7bD_

Fold library id	PDB Header	Molecule	Title
c7l7bD_	3.26	PDB header: transcription/inhibitor	Chain: D: PDB Molecule: dna-directed rna polymerase subunit beta';

Links to external resources
Added to library: Sat Feb 5 09:19:22 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E L N N F E S I K I A L A S P E K I R Q W S R G E V K K P E T I N Y R T L K P E K D G L F C E R I F G P Q K D W E C H C G K Y R R V R Y K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
T T T
B
S S S T T
S S S S
S S T T
S S
S S
S T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V C D R C G V E V T K S K V R R E R M G H I E L A A P M S H I W Y F K G I P S R M G L L L D M S P R S L E K I L Y F A S Y V V V D P G E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T
B
G G G G G S
S S S S
T T
B
B S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G L N E K Q L L T E K E Y R T A L E K Y G Y T F T V G M G A E A V K T L L Q N I D L E Q Q S K D L R A E L K D S T G Q K K V R T I R R L E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
B
S
S
B
T
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V E A F K K S G N K P E W M I L D A I P V I P P D L R P M V Q L D G G R F A T S D L N D L Y R R V I N R N N R L K R L L E L G A P D I I V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G G
G G G S
T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence N E K R M L Q E A V D A L I D N G R R G R P V T G P G N R P L K S L S D M L K G K Q G R F R Q N L L G K R V D Y S G R S V I V V G P E L K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S S S S
B
T T S
B
G G G G T S S T T S S T T T T T T
S S
T T S
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence Y Q C G L P K K M A L E L F K P F V M D K L V K E G Y A H N I K S A K S I V E K V K P E V W D V L E D V I K S H P V L L N R A P T L H R L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
S S S
T T T
S S
S G G G

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I Q A F E P I L V E G K A I K L H P L V C T A Y N A D F D G D Q M A V H V P L S V E A Q A E A R F L M L S V N N I L A P K D G S P I T T P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S T T T
S S S
S S B G G G
S B
T T T S S B S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence Q D M V L G C Y Y L T I E A Q D G A K G T G M V F K D F N E L L L A Y Y N K S V H L H A L V K L K V T L E D G R S S L V E S T V G R F I F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S
S
B
S
T T S S
T T
T T S
T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence E N I P Q D L G F V D R K E N P F A L E V D F L A D K K S L G K I I D K C F R K H G N T E T A E L L D Y I K A L G F K Y S T L G G I T V A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S
S S S S
T T T
S S
S
S
S
S S T T T S S T
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D D M S V P E E K K V F I A E A E A K V D K Y E K A Y R R G L I S D E E R Y E K V I E T W T E T T D K V T D A L M G G L D R L N N I Y I M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S T T T T S S
T S
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence H S G A R G S K N Q I R Q L A G M R G L M A N A S G K T V E I P V K S N F R E G L S V L E Y F T S S H G A R K G L A D T A I R T A E S G Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S
B
T T S
S S
B
T T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence T R R L V D V S Q D V I V R E I D C G T E D T T E I Y A I K E G N E V I E E I Y D R I V G R Y T I D P I L N P E T G E V I V E A D S M I Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
B
S
S S S
S S
S T T T T T T T
S S
B
T T T
B S S
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence D E A E T I V A L G I E K I R I R T V L N C K T N H G V C S K C Y G R N L A T G K E V N I G E A V G I I A A Q S I G E P G T Q L T M R T F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S S S
B
T T T S S B
S
B S T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence Q G L P R V E E L F E A R K P K G L A V I T E V S G R V E I D E T G K R K E V N V I P E E G E T Q T Y V I P Y G S R L K V K Q G Q M L E A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S S B
B
S S
S
T T
S S S S
S S
T T
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence D P L T Q G F I N P H D I V R V N G V K G V Q E Y I V K E V Q R V Y R L Q G V D V N D K H I E V I V R Q M L S K V K V E D P G D T D L L P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S S S B
T T T
T T S
T
S S
T T T T
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence G Y E D V L T F N E C N K D A I D K G L R P A V A K R V L L G I T K A S L A T D S F L S A A S F Q E T T R V L T E A A I K G K E D H L I G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S S S
S T T
S
T T S S
T T T
S T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . .

Sequence K E N V I L G K L I P A G T G M K K Y R N I A V E K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S G G G S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	L	N	N	F	E	S	I	K	I	A	L	A	S	P	E	K	I	R	Q	W	S	R	G	E	V	K	K	P	E	T	I	N	Y	R	T	L	K	P	E	K	D	G	L	F	C	E	R	I	F	G	P	Q	K	D	W	E	C	H	C	G	K	Y	R	R	V	R	Y	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							S	S								B		T	T	T			B		S	S	S	T	T		S	S	S	S			S	S	T	T			S	S		S	S		S	T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	C	D	R	C	G	V	E	V	T	K	S	K	V	R	R	E	R	M	G	H	I	E	L	A	A	P	M	S	H	I	W	Y	F	K	G	I	P	S	R	M	G	L	L	L	D	M	S	P	R	S	L	E	K	I	L	Y	F	A	S	Y	V	V	V	D	P	G	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B		T	T	T			B				G	G	G	G	G	S														S					S	S	S																			T	T			B		B	S			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	L	N	E	K	Q	L	L	T	E	K	E	Y	R	T	A	L	E	K	Y	G	Y	T	F	T	V	G	M	G	A	E	A	V	K	T	L	L	Q	N	I	D	L	E	Q	Q	S	K	D	L	R	A	E	L	K	D	S	T	G	Q	K	K	V	R	T	I	R	R	L	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S	S			B												S		S				B			T													S																S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	E	A	F	K	K	S	G	N	K	P	E	W	M	I	L	D	A	I	P	V	I	P	P	D	L	R	P	M	V	Q	L	D	G	G	R	F	A	T	S	D	L	N	D	L	Y	R	R	V	I	N	R	N	N	R	L	K	R	L	L	E	L	G	A	P	D	I	I	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S			G	G	G	G										G	G	G	S						T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	N	E	K	R	M	L	Q	E	A	V	D	A	L	I	D	N	G	R	R	G	R	P	V	T	G	P	G	N	R	P	L	K	S	L	S	D	M	L	K	G	K	Q	G	R	F	R	Q	N	L	L	G	K	R	V	D	Y	S	G	R	S	V	I	V	V	G	P	E	L	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	T	T	S	S	S	S			B		T	T	S		B				G	G	G	G	T	S	S	T	T	S	S	T	T	T	T	T	T					S	S										T	T	S		T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	Y	Q	C	G	L	P	K	K	M	A	L	E	L	F	K	P	F	V	M	D	K	L	V	K	E	G	Y	A	H	N	I	K	S	A	K	S	I	V	E	K	V	K	P	E	V	W	D	V	L	E	D	V	I	K	S	H	P	V	L	L	N	R	A	P	T	L	H	R	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													T											T	T	S		S	S										S			T											T	T								S	S			S	G	G	G
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	Q	A	F	E	P	I	L	V	E	G	K	A	I	K	L	H	P	L	V	C	T	A	Y	N	A	D	F	D	G	D	Q	M	A	V	H	V	P	L	S	V	E	A	Q	A	E	A	R	F	L	M	L	S	V	N	N	I	L	A	P	K	D	G	S	P	I	T	T	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S						S	T	T					T			S	S	S										S											S	B	G	G	G		S	B		T	T	T	S	S	B	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	Q	D	M	V	L	G	C	Y	Y	L	T	I	E	A	Q	D	G	A	K	G	T	G	M	V	F	K	D	F	N	E	L	L	L	A	Y	Y	N	K	S	V	H	L	H	A	L	V	K	L	K	V	T	L	E	D	G	R	S	S	L	V	E	S	T	V	G	R	F	I	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T						T	T		S	S		S		B		S											T	T	S	S		T	T										T	T	S															T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	E	N	I	P	Q	D	L	G	F	V	D	R	K	E	N	P	F	A	L	E	V	D	F	L	A	D	K	K	S	L	G	K	I	I	D	K	C	F	R	K	H	G	N	T	E	T	A	E	L	L	D	Y	I	K	A	L	G	F	K	Y	S	T	L	G	G	I	T	V	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S		S		S	S	S	S		T	T	T		S	S			S			S																		S		S	S	T	T	T	S	S																T					T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	D	M	S	V	P	E	E	K	K	V	F	I	A	E	A	E	A	K	V	D	K	Y	E	K	A	Y	R	R	G	L	I	S	D	E	E	R	Y	E	K	V	I	E	T	W	T	E	T	T	D	K	V	T	D	A	L	M	G	G	L	D	R	L	N	N	I	Y	I	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S				S	T	T																				T	T	S	S																											T	S		T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	H	S	G	A	R	G	S	K	N	Q	I	R	Q	L	A	G	M	R	G	L	M	A	N	A	S	G	K	T	V	E	I	P	V	K	S	N	F	R	E	G	L	S	V	L	E	Y	F	T	S	S	H	G	A	R	K	G	L	A	D	T	A	I	R	T	A	E	S	G	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S										S	S			B					T	T	S				S	S		B				T	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	T	R	R	L	V	D	V	S	Q	D	V	I	V	R	E	I	D	C	G	T	E	D	T	T	E	I	Y	A	I	K	E	G	N	E	V	I	E	E	I	Y	D	R	I	V	G	R	Y	T	I	D	P	I	L	N	P	E	T	G	E	V	I	V	E	A	D	S	M	I	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	S		B				S															S	S	S		S	S		S	T	T	T	T	T	T	T				S	S			B		T	T	T			B	S	S		S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	D	E	A	E	T	I	V	A	L	G	I	E	K	I	R	I	R	T	V	L	N	C	K	T	N	H	G	V	C	S	K	C	Y	G	R	N	L	A	T	G	K	E	V	N	I	G	E	A	V	G	I	I	A	A	Q	S	I	G	E	P	G	T	Q	L	T	M	R	T	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T									G	G	G				S	S	S								B		T	T	T	S	S	B			S			B											S	T					T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	Q	G	L	P	R	V	E	E	L	F	E	A	R	K	P	K	G	L	A	V	I	T	E	V	S	G	R	V	E	I	D	E	T	G	K	R	K	E	V	N	V	I	P	E	E	G	E	T	Q	T	Y	V	I	P	Y	G	S	R	L	K	V	K	Q	G	Q	M	L	E	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S									T					S	S	B			B		S	S									S		T	T								S	S	S	S								S	S							T	T					T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	D	P	L	T	Q	G	F	I	N	P	H	D	I	V	R	V	N	G	V	K	G	V	Q	E	Y	I	V	K	E	V	Q	R	V	Y	R	L	Q	G	V	D	V	N	D	K	H	I	E	V	I	V	R	Q	M	L	S	K	V	K	V	E	D	P	G	D	T	D	L	L	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	S	S	S	S	B			T	T						T																			T	T	S																T						S	S		T	T	T	T			T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	G	Y	E	D	V	L	T	F	N	E	C	N	K	D	A	I	D	K	G	L	R	P	A	V	A	K	R	V	L	L	G	I	T	K	A	S	L	A	T	D	S	F	L	S	A	A	S	F	Q	E	T	T	R	V	L	T	E	A	A	I	K	G	K	E	D	H	L	I	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G	T	S	S	S																S	T	T		S						T	T	S	S											T	T	T							S	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.
Sequence	K	E	N	V	I	L	G	K	L	I	P	A	G	T	G	M	K	K	Y	R	N	I	A	V	E	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T						T	S			S	S	G	G	G	S					S