PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7l7bC_

Fold library id	PDB Header	Molecule	Title
c7l7bC_	3.26	PDB header: transcription/inhibitor	Chain: C: PDB Molecule: dna-directed rna polymerase subunit beta;

Links to external resources
Added to library: Sat Feb 5 09:11:22 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P H P V T I G K R T R M S F S K I K E I A D V P N L I E I Q V D S Y E W F L K E G L K E V F D D I S P I E D Y T G N L I L E F V D Y S L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S
T T
S
S S S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D K P K Y D I E E C K E R D A T Y C A P L K V K V R L I N K E T G E I K E Q E V F M G D F P L M T E R G T F V I N G A E R V I V S Q L V R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T
T T T
T T S
T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P G V Y Y A E E R D K T G K R L I S S T V I P N R G A W L E Y E T D S N D V I S V R V D R T R K Q P V T V L L R A L G I G T D A E I I D L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
S S S
S S S
T T
B T T T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G E D E R L S A T L E K D N T K T V E E G L V E I Y K K L R P G E P P T V E S A S S L L N A L F F D P K R Y D L A K V G R Y K F N K K L A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
T S T T S
S
T T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence C Y R I M N K I S A E D I I N P E T G E V F V K A G E K I S Y D L A K A I Q N A G I N V V N L L M D D D K K V R V I G N N F V D I K S H I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B S S
T T T
T T
T T
T T S
S
G G G T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence F D I D D L N I K E K V H Y P T L K E I L D G Y S D E E E I K E A I K S R I K E L I P K H I L L D D I I A S I S Y E F N I F Y N I G N I D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
S
S T S
S S
G G G T
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I D H L G N R R I R S V G E L L Q N Q V R I G L S R M E R V I K E R M T V Q D M E A I T P Q A L V N I R P V S A A I K E F F G S S Q L S Q F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S S
B
S
T T
S
S S
T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence M D Q T N P L S E L T H K R R L S A L G P G G L S R E R A G F E V R D V H H S H Y G R M C P I E T P E G P N I G L I N S L G T Y A K I N E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T S
S T T S
S T T
S S S S S
T T
T T T B
S S
S
S S T T T T T B
S S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence G F I E S P Y R K F D K E T S T V T D E I H Y L T A D E E D L F V R A Q A N E P L T E D G K F V N H R V V C R T V N G A V E M V P E S R V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T
S
B
S S
B
S S S
B S S S S B
T T S
G G G

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence Y M D I S P K Q V V S V A T A M I P F L E N D D A N R A L M G A N M Q R Q A V P L V R R E A P I I G T G I E Y R A A K D S G A V V V A R N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S S
T T T T T S T T G G G S
G G G B
S S
S B
T T T T
S
B
S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence G I A E R V T A D E I I I K R E D G N R D R Y N L L K F K R S N S G T C I N Q T P I I N K G D Q I I K G D V I A D G P A T D L G E V A L G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
S
B
T T S
B
S S
T T
B
T T
S T T S
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence N C L I A F M T W E G Y N Y E D A I L I N E R L V K E D R L S T I H I E E Y E C E A R D T K L G P E E I T R D I P N V G D S A I K N L D D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T
S S
T T T S S
S S S
B
S S
S S
G G G G S S B
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence G I I R I G A E V D S G D I L V G K V T P K G E T E L T A E E R L L R A I F G E K A R E V R D T S L K V P H G E S G I I V D V K V F T R E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S B
T T
B S S S
S S
S
T T
B
T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence G D D L S P G V N E L V R C Y I A K K R K I K V G D K M A G R H G N K G V I S R V L P E E D M P F M E N G T P L D I I L N P Q G I P S R M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S
S S
B
B T T S
B
G G G S
B
T T S
B
S
G G G

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence I G Q V L E V H L G L A A K T L G W Y V A T S V F D G A N E Y D I M D A L E E A G Y P R D G K L T L Y D G R T G E S F D N R I T V G Y M Y Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T S
T T
B
T T T
S B
S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L K L H H L V D E K L H A R S T G P Y S L V T Q Q P L G G K A Q F G G Q R F G E M E V W A L E A Y G A A H I L Q E I L T V K S D D V V G R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G S
S S
S S S
S
S S S
T
T S S S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . .

Sequence R T Y E A I V K G E N I P E P G I P E S F K V L I K E L Q S L C L D V K V L T D E D Q E I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	H	P	V	T	I	G	K	R	T	R	M	S	F	S	K	I	K	E	I	A	D	V	P	N	L	I	E	I	Q	V	D	S	Y	E	W	F	L	K	E	G	L	K	E	V	F	D	D	I	S	P	I	E	D	Y	T	G	N	L	I	L	E	F	V	D	Y	S	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S								S			S	S					T	T																								S				S	S	S	S									B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	K	P	K	Y	D	I	E	E	C	K	E	R	D	A	T	Y	C	A	P	L	K	V	K	V	R	L	I	N	K	E	T	G	E	I	K	E	Q	E	V	F	M	G	D	F	P	L	M	T	E	R	G	T	F	V	I	N	G	A	E	R	V	I	V	S	Q	L	V	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S	S								T	T																T	T	T																		T	T	S					T	T									B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	G	V	Y	Y	A	E	E	R	D	K	T	G	K	R	L	I	S	S	T	V	I	P	N	R	G	A	W	L	E	Y	E	T	D	S	N	D	V	I	S	V	R	V	D	R	T	R	K	Q	P	V	T	V	L	L	R	A	L	G	I	G	T	D	A	E	I	I	D	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										S	S	S											S	S	S									S	S	S							T	T					B	T	T						T	T			T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	E	D	E	R	L	S	A	T	L	E	K	D	N	T	K	T	V	E	E	G	L	V	E	I	Y	K	K	L	R	P	G	E	P	P	T	V	E	S	A	S	S	L	L	N	A	L	F	F	D	P	K	R	Y	D	L	A	K	V	G	R	Y	K	F	N	K	K	L	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	S														T												S	T	T	S																S		T	T	T															S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	C	Y	R	I	M	N	K	I	S	A	E	D	I	I	N	P	E	T	G	E	V	F	V	K	A	G	E	K	I	S	Y	D	L	A	K	A	I	Q	N	A	G	I	N	V	V	N	L	L	M	D	D	D	K	K	V	R	V	I	G	N	N	F	V	D	I	K	S	H	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T			B	S	S					T	T	T							T	T														T	T									T	T	S									S				G	G	G	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	F	D	I	D	D	L	N	I	K	E	K	V	H	Y	P	T	L	K	E	I	L	D	G	Y	S	D	E	E	E	I	K	E	A	I	K	S	R	I	K	E	L	I	P	K	H	I	L	L	D	D	I	I	A	S	I	S	Y	E	F	N	I	F	Y	N	I	G	N	I	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			G	G	G				S																S											T					S		S	S																G	G	G	T		S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	D	H	L	G	N	R	R	I	R	S	V	G	E	L	L	Q	N	Q	V	R	I	G	L	S	R	M	E	R	V	I	K	E	R	M	T	V	Q	D	M	E	A	I	T	P	Q	A	L	V	N	I	R	P	V	S	A	A	I	K	E	F	F	G	S	S	Q	L	S	Q	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S	S	S			B																													S		T	T		S																				S	S		T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	M	D	Q	T	N	P	L	S	E	L	T	H	K	R	R	L	S	A	L	G	P	G	G	L	S	R	E	R	A	G	F	E	V	R	D	V	H	H	S	H	Y	G	R	M	C	P	I	E	T	P	E	G	P	N	I	G	L	I	N	S	L	G	T	Y	A	K	I	N	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S									T				S		S	T	T	S			S	T	T			S	S	S	S	S			T	T		T	T	T	B		S	S		S		S	S	T	T	T	T	T				B		S	S					S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	G	F	I	E	S	P	Y	R	K	F	D	K	E	T	S	T	V	T	D	E	I	H	Y	L	T	A	D	E	E	D	L	F	V	R	A	Q	A	N	E	P	L	T	E	D	G	K	F	V	N	H	R	V	V	C	R	T	V	N	G	A	V	E	M	V	P	E	S	R	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S											T	T	T	T																	S		B			S	S			B		S	S	S		B	S	S	S	S				B		T	T	S							G	G	G
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Y	M	D	I	S	P	K	Q	V	V	S	V	A	T	A	M	I	P	F	L	E	N	D	D	A	N	R	A	L	M	G	A	N	M	Q	R	Q	A	V	P	L	V	R	R	E	A	P	I	I	G	T	G	I	E	Y	R	A	A	K	D	S	G	A	V	V	V	A	R	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S	S	S	S	S		T	T	T	T	T	S	T	T	G	G	G	S												G	G	G	B				S	S					S	B			T	T								T	T		S		B		S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	G	I	A	E	R	V	T	A	D	E	I	I	I	K	R	E	D	G	N	R	D	R	Y	N	L	L	K	F	K	R	S	N	S	G	T	C	I	N	Q	T	P	I	I	N	K	G	D	Q	I	I	K	G	D	V	I	A	D	G	P	A	T	D	L	G	E	V	A	L	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S							T	T	S										S		B		T	T	S		B									S	S					T	T		B					T	T		S	T	T	S				S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	N	C	L	I	A	F	M	T	W	E	G	Y	N	Y	E	D	A	I	L	I	N	E	R	L	V	K	E	D	R	L	S	T	I	H	I	E	E	Y	E	C	E	A	R	D	T	K	L	G	P	E	E	I	T	R	D	I	P	N	V	G	D	S	A	I	K	N	L	D	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S			T	T	T	T		S	S						T					T	T	S	S																S	S	S			B		S	S			S	S			G	G	G	G	S	S	B		S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	G	I	I	R	I	G	A	E	V	D	S	G	D	I	L	V	G	K	V	T	P	K	G	E	T	E	L	T	A	E	E	R	L	L	R	A	I	F	G	E	K	A	R	E	V	R	D	T	S	L	K	V	P	H	G	E	S	G	I	I	V	D	V	K	V	F	T	R	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	B		T	T				B	S	S	S		S	S																												S										T	T		B											T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	G	D	D	L	S	P	G	V	N	E	L	V	R	C	Y	I	A	K	K	R	K	I	K	V	G	D	K	M	A	G	R	H	G	N	K	G	V	I	S	R	V	L	P	E	E	D	M	P	F	M	E	N	G	T	P	L	D	I	I	L	N	P	Q	G	I	P	S	R	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S	T	T		S															S	S		B			B	T	T	S				B							G	G	G	S		B		T	T	S		B		S					G	G	G
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	I	G	Q	V	L	E	V	H	L	G	L	A	A	K	T	L	G	W	Y	V	A	T	S	V	F	D	G	A	N	E	Y	D	I	M	D	A	L	E	E	A	G	Y	P	R	D	G	K	L	T	L	Y	D	G	R	T	G	E	S	F	D	N	R	I	T	V	G	Y	M	Y	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T							S	S	S															T	S		T	T						B		T	T	T		S	B		S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	K	L	H	H	L	V	D	E	K	L	H	A	R	S	T	G	P	Y	S	L	V	T	Q	Q	P	L	G	G	K	A	Q	F	G	G	Q	R	F	G	E	M	E	V	W	A	L	E	A	Y	G	A	A	H	I	L	Q	E	I	L	T	V	K	S	D	D	V	V	G	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B				G	G	G	S					S	S					S	S	S		S					S	S	S																		T											T	S	S	S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.
Sequence	R	T	Y	E	A	I	V	K	G	E	N	I	P	E	P	G	I	P	E	S	F	K	V	L	I	K	E	L	Q	S	L	C	L	D	V	K	V	L	T	D	E	D	Q	E	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S																				T	T	T								T	T	S