PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7l7bA_

Fold library id	PDB Header	Molecule	Title
c7l7bA_	3.26	PDB header: transcription/inhibitor	Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;

Links to external resources
Added to library: Sat Feb 5 08:58:42 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K P K V D I V E L S E D Y R Y G K F V I E P L E R G Y G I T I G N A L R R I L L S S L P G V A V N A I K I D G V L H E F S T I P G V K E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T S
T T
S S S S
T T B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T E I I L T L K E L S A T I D G E G S R T L K I E A Q G P C S I T G A D I I C P P D V E I L S K D L A I A T L D D N A K L N M E I F V D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S S S S
S S
G G G
B
S S
S
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R G Y V S A E E N K T E N V P I G V L P V D S I Y T P V E K V S Y H V E N T R V G Q K T D Y D K L V L E V W T N G S I N P Q E G I S L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
S S
S S T T
B
B
B
S S S
S S S

. . . . . . . . . 220 . . . .

Sequence K V L V E H L N L F I D L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	P	K	V	D	I	V	E	L	S	E	D	Y	R	Y	G	K	F	V	I	E	P	L	E	R	G	Y	G	I	T	I	G	N	A	L	R	R	I	L	L	S	S	L	P	G	V	A	V	N	A	I	K	I	D	G	V	L	H	E	F	S	T	I	P	G	V	K	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S	S											T	T																S												T	T			S	S	S	S			T	T	B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	E	I	I	L	T	L	K	E	L	S	A	T	I	D	G	E	G	S	R	T	L	K	I	E	A	Q	G	P	C	S	I	T	G	A	D	I	I	C	P	P	D	V	E	I	L	S	K	D	L	A	I	A	T	L	D	D	N	A	K	L	N	M	E	I	F	V	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								T	T						S	S	S	S										S	S					G	G	G		B			S	S				S									B		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	G	Y	V	S	A	E	E	N	K	T	E	N	V	P	I	G	V	L	P	V	D	S	I	Y	T	P	V	E	K	V	S	Y	H	V	E	N	T	R	V	G	Q	K	T	D	Y	D	K	L	V	L	E	V	W	T	N	G	S	I	N	P	Q	E	G	I	S	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		B							S	S		S	S	T	T						B												B			B			S	S	S														S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	K	V	L	V	E	H	L	N	L	F	I	D	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	S	T	T