Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7kpxD_

Fold library idPDB HeaderMoleculeTitle
c7kpxD_4.40PDB header: transcriptionChain: D: PDB Molecule: mediator of rna polymerase ii transcription subunit 13;


Added to library: Sat Jan 30 08:31:37 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ASTYRLEDVLSSFYRVEKIKKINYHQYISKAQNDQWSIQMEFMLRKQDPKTLVALLSRDLWCFSINDDPV
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)





SS
B
S



S


GGG
SSTT
TT
SSS

SSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PTPPAIEHKPVSPDKIGTFTADYSKPNLPPHYALFLKALRRKIYINLALGSHNKLIQFGNACISLSGVPN
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)





SS




S
S


TTS

TTSSS

SS
SSSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YLVQLEPHLFVNGDLTVSLCAKNMGLVPMKEENLEESFLSKHALYLAPSGIRMHLAPASKQGYLITPPKH
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) S
SSS






GGG
SSSTTT





SSSS
B


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TELLLTTLSVSHGINLQNKKNLKWVAVVPDLGHLNGHTPTIASYLTPLLEAKKLVWPLHLIFAQPVADIE
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TTTTTSSS


SS
S



TT



TTS
S




S

GGG
B


 .........290.........300.........310.........320.........330.........340.........350
Sequence NSTSGDPSEFHCLQDALDAIDDFIQLKQSSSLPFLLRHMPLASIPDIFITPTPVVTISEKEQDILDLIAE
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S
SSS
TTTTSST


S



SSSS
S

BSS


SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence QVVTDYNILGNLGIPKIAYRGVKDCQEGLITTTMLQLFSTFDRLNGNDTISKFYNMKQPYVFVKKHHELI
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) T

SSS


S




B






SSSSS







SSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KVKHDSQPFIKFLNFRPPNGIKNFKSLLLSSSFKEDCLSFAPTLSQTYINQELGFCELLKLTNEDPPGLM
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TT
STTSTTTT
B
TT



B

SS
TTTS

B




SSS

SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence YLKAFDKNKLLLLAAQIVSYCSNNKNSIKNVPPILIILPLDNATLTELVDKANIFQVIKNEVCAKMPNIE
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)

SS

S
S

SSS

SSSSSTTTTSSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LYLKVIPMDFIRNVLVTVDQYVNVAISIYNMLPPKSVKFTHIAHTLPEKVNFRTMQQSSSIIYYDSYIHL
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)
TT

TTTTTSSSTT

S

B




S





S



S



S
 .........640.........650.........660.........670.........680.........690.........700
Sequence AYSRSVDKEWVFAALSDSYGQGSMTKTWYVGNSRGKFDDACNQIWNIALNLASKKFGKICLILTRLNGIL
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
SSS
TTS
S


S
STTS
SSSSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence PDDELMNWRRLSGRNIHLAVVCVDDNSKISFIDEDKLYPSFKPIYKDTRFGGRMDMTRLYDYEIRDIDQD
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP)

SSSS

S
SS



SSSSTTSS
SS




TTS






TTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence IHGIVFQHPFPLAHSQHRCAIRSGALIKFKKCDGDTVWDKFAVNLLNCPHSDSTQLLETILEEFRNLAAL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)
SS

B
SS
TT
B


SSSSS

SSS
G
 .........850.........860.........870......
Sequence NVWYGLSDGEDGHIPWHILAVKKMMNTLVHTRVKIA
Predicted secondary structure









SS confidence



































Known secondary structure (DSSP) GGTTTT

TT
SSS
STTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D