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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7k1kA_

Fold library idPDB HeaderMoleculeTitle
c7k1kA_4.10PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jan 9 21:18:45 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSI
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Known secondary structure (DSSP)
TTTTSSS
TTTTS


SB
SSSBTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDE
Predicted secondary structure









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Known secondary structure (DSSP) S
SS
GGGGGG


TTTS
SSGGGSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPK
Predicted secondary structure













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Known secondary structure (DSSP) S
GGGS
S
S
SS
TTTSSSSSSS
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCL
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Known secondary structure (DSSP) TSSS


TTT
TTS


S

S




TT

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNN
Predicted secondary structure








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Known secondary structure (DSSP) SSSTTS

S
S

T

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDT
Predicted secondary structure





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Known secondary structure (DSSP) SSTTTTT

STTTSSSSSSSS

S


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVV
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Known secondary structure (DSSP)


SS

SS

TTTTTSS
TTGGGTTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence WKVPTYKDYVDLFRHLLSSDQMMDSILLNHLLYDEFVKSVLKIVEKLDLTLEIMIPTSDPAANLHPAKPK
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Known secondary structure (DSSP)




SGGGTTTGGGGT
S


TTS








STTSS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence DFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGKYS
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Known secondary structure (DSSP) TTTSSS

TTTSGGGSSTT
TTS





 .........640.........650.........660.........670.........680.........690.........700
Sequence CFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNA
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Known secondary structure (DSSP) GGG

TTS

SSS
S

TTTGGGTTTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LEEWSIYIDRHVMQPYYKDILPCLDGYLKALSRAAQKGFNKVVLKHLKKTKNLSSNEAISLEEIRIRVVQ
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Known secondary structure (DSSP) S
TTSSTTTTTTTGGG

SS


TT

SSTTT








 .........780.........790.........800.........810.........820.........830.........840
Sequence MLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTK
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Known secondary structure (DSSP)
SSSGGGTTTSTTTSSSTTTSS
SSSS





SS


TTTT

SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VAACELLHSMVMFMLGKATQPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQD
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Known secondary structure (DSSP) T




TTTTSS
SSSSSGGGTT
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence TVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKR
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Known secondary structure (DSSP) S
SS
TTTS

TTS
SS
TTSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSL
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Known secondary structure (DSSP) TTSSSSSSSSSTTTTTTTTSSS
SSSSSTTTTTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence NKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEE
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Known secondary structure (DSSP)








TTS


S

SSSTT


GGGSTT


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GVSFLINTFEGGGCGLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLLKAVAFFLESIAM
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Known secondary structure (DSSP) TT





SSS



TTTS



TTSTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVM
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Known secondary structure (DSSP)

ST
STTSTTS
GGGGSTTS
GGGTT

SS
TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence AHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVSACKQLHRAG
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Known secondary structure (DSSP) TTTTSTTTTTS
SS
S

SSS
SSTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LLHNILPSQSTDLHHSVGTELLSLVYKGIAPGSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLS
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Known secondary structure (DSSP)

TTT




SSS

STS




TTSSS

T





 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence TAHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLA
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Known secondary structure (DSSP)




SSS
STT

SSTS
SSSTTSTTTT
S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence TTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLK
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Known secondary structure (DSSP) GGGTTTS
TT
SSS
SSTTTTS
S
TTSTT
SSTTS

S
STTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLL
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Known secondary structure (DSSP) T

TTTTTS
TTS
SSS



TTSTT


TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLW
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Known secondary structure (DSSP) TTSSS
TT

SSTS




T
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence HCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMGYYKILDVMYSRLPKDDVHAKESKINQV
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Known secondary structure (DSSP) S
S
TT

TTTS


TT
S

TTTSSSSSTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence FHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSE
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Known secondary structure (DSSP) TTSS
S

STTTT



TT

SS
TTS


S

TTTSSS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence KPEKNLLIFENLIDLKRRYNFPVEVRKKKYIEIRKEAREAANELEMDELNRHECMAPLTALVKHMHRSLR
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Known secondary structure (DSSP)
GGGT

SS

SS




S







SSSS
SSSS


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence DLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIV
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Known secondary structure (DSSP)

TTTTS
TTS
TTTTTSSSTTTTTSSS

SSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ATILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKF
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Known secondary structure (DSSP) TTSTTS

STT
S


SSSSS




SS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SGKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYV
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Known secondary structure (DSSP)


STTS
TTSSS



TTTS

T



TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence MERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEV
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Known secondary structure (DSSP) S
SSS
STS
TTTTTTSTSTT

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence VLCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCR
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Known secondary structure (DSSP) TTSSS
SS
TTTSS

STT

TTTGGG
SS


 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence EQMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLL
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Known secondary structure (DSSP)


SS



SSTTTTTTS
SSTTTSTTTS

SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence ALNSLYSPKIEVHFLSLATNFLLEMTSHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEK
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Known secondary structure (DSSP) TTTT

TT

TTT



TTTTT
TSSSS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence NNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLR
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Known secondary structure (DSSP)

S

TTTSTTSSS

TTTTTTT


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence PPDVLRWVELAKLYRSIGEYDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEP
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Known secondary structure (DSSP)
TTTTTTS
TTTTTTS
S
STT
TTTTT




SS

 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence TEAEKDFWELASLDCYNHLAEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGE
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Known secondary structure (DSSP)
TTT

TTS

SS


SSSTTSSTSTTT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence ADQSLLTFIDKAMHGELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRL
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Known secondary structure (DSSP)



SSSSTTTTTTT
TT
TS
SS
TT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence TKLQSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEK
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Known secondary structure (DSSP) TTS
TTSSS
S



TTTS
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LTDISSLIRSCKFSMKMKMIDSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGC
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Known secondary structure (DSSP)



TTTS
TTTTTTSSTSS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence SEQVLTVLKTVSLLDENNVSSYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELS
Predicted secondary structure

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Known secondary structure (DSSP) SSSTTTSSTTTTT
S
SGGGGS


 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence EKVIAGLYQRAFQHLSEAVQAAAGVIDAYMTLADFCDQQLRKEEEQAYPALVVEKMLKALKLNSNEARLK
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Known secondary structure (DSSP)
TTTT


SSTT


TS

TT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence FPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFI
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Known secondary structure (DSSP) S
SSSSSSS
TTSSGGGGGGTTTSSSSS

SSSS
TTTT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence ISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKK
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Known secondary structure (DSSP) TS



SSTTSS
S

TTS
TTS
TT

S
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence NIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDS
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Known secondary structure (DSSP) SSSSSS


TTTTTTTTTTTT



S

TTTS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence KPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHD
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Known secondary structure (DSSP)




SSTTST



S
S




SS


SSSS

GGGS




B
S



SSS


BB
TT
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence EREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKD
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Known secondary structure (DSSP) S
B

SS

STTSSTTT






TT


SS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence LLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLK
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Known secondary structure (DSSP) SS
S
TTSSSSSTTST

STTS
S
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence RAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLP
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Known secondary structure (DSSP) SS


TTTTTTTT




TTSTTTT


SS
SS
SS
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence VPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLKKG
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Known secondary structure (DSSP) S



SS


SSSTTS
TTSSTTTTSSSSS
S
SSS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence GSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEP
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Known secondary structure (DSSP) SS




SSSSS


TTT
B
TTTTSTT
TT

SSS
GGGSS
 .........3580.........3590.........3600....
Sequence ESGLSEETQVKCLMDQATDPNILGRTWEGWEPWM
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Known secondary structure (DSSP) SBS

S
TSS
GGG
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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