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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7k1jA_

Fold library idPDB HeaderMoleculeTitle
c7k1jA_3.90PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jan 9 21:40:34 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSI
Predicted secondary structure

















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Known secondary structure (DSSP)
TTSSSSTTTTS

SS

SSS
T
S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDE
Predicted secondary structure









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Known secondary structure (DSSP) S

TTS
STTTTSS


GGGTST
SSSSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FKIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPK
Predicted secondary structure












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Known secondary structure (DSSP) S
TTSSSS


STTS
TTSTTSS
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LPVLAGCLKGLSSLLCNFTKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCL
Predicted secondary structure














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Known secondary structure (DSSP) TTT



TTT
TTT



S


TTS
TT
SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNN
Predicted secondary structure








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Known secondary structure (DSSP) SSSTT


TTTTTSTTSS
STTSSS


SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KELSIAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDT
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) TTTTTTTTSSTTSSS
SSS



TTTT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVV
Predicted secondary structure







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Known secondary structure (DSSP)

SSS

SSS
TTTTSS
TTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence KVPTYKDYVDLFRHLLSSLNHLLYDEFVKSVLKIVEKLDLTLEIQTMIPTSDPAANLHPAKPKDFSAFIN
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Known secondary structure (DSSP)



SSTT


SSS











STTSS



SSTTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGKYSCFALFVK
Predicted secondary structure





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Known secondary structure (DSSP) SSS

SSSSGGGSSTT
TTS





TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence FGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNALEEWSIY
Predicted secondary structure





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Known secondary structure (DSSP) GGG

TTS

SSS
S

TTTGGGTTTTTTT
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence IDRHVMQPYYKDILPCLDGYLKALSRAAQKGFNKVVLKHLKKTKNISLEEIRIRVVQMLGSLGGQINKNL
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Known secondary structure (DSSP) S
TTTSTTTTTTTGGG

SS


S
SSSSTT



SSSGGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence LTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMF
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Known secondary structure (DSSP) S
SSS
SSSS
S
SS





SS


TTTTSTTTT

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence MLGKATQPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIV
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Known secondary structure (DSSP) TT



TTTTSS
SSSSSGGG
S
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence DPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYRE
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Known secondary structure (DSSP)
SS
TTSSS
TTTSSS
TTSTT
SSTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFP
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Known secondary structure (DSSP) STT
SSSTTTSTSSS
GGGSSTTS









TTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGG
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Known secondary structure (DSSP)

S

SSSTT
S
TTTSTTSTT


TTT
TTTTTTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence CGLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGLLKAVAFFLESIAMSPQEGERYNYS
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Known secondary structure (DSSP)





SS



TSSSS

S

TTTT

TTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence KCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLM
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Known secondary structure (DSSP) TTSSS

S


S
TTTSSTTSS

TTTT

TT

S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence KALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSRLAAVVSACKQLHRAGLLHNILPSQST
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Known secondary structure (DSSP) SSSSSTTTTT
S

S
SSSS
SSTTTT

TTTS


TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DLHHSVGTELLSLVYKGIAPCLPSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTAHFSHGEY
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Known secondary structure (DSSP) SSS
TS







STSSS

S



B



B

T
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence FYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKK
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Known secondary structure (DSSP) S
SSSTTTTT
SSSTTTT

STTGGG
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence CDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPF
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Known secondary structure (DSSP)

SSSSTTS
TT

TTSSSSSSSSSSSS
SGGGT

TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FTSLTGGSLEELRRVLEQLIVAHFTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELF
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Known secondary structure (DSSP) TSS

SST

TT


TTTTSS

TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence QSSFRRIARRGSCVTQVGLLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAI
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Known secondary structure (DSSP)
SS
S




TSSS

TT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DVLKSRFTKLNESTFDTQITKKMGYYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKL
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Known secondary structure (DSSP) T




SSSS
SSTTTTSSSS
S

STTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence CYDAFTENMAGENQLLERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRRY
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Known secondary structure (DSSP) TT



SS

S

TTTTS

SSTTTTTTTS


GGG


SS

SS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence NFPVEVSTLSEEMSQFDFSTGELEMDELNRHECMAPLTALVKHMHRSLRDLPSWMKFLHGKLGNPIVPLN
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Known secondary structure (DSSP)


S



TTS





SSSSSSSSTT



SSSSSSTTS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence IRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVL
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Known secondary structure (DSSP) TTTTTGGGTTTTTSS
SSTT

TTTSS
SSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVM
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Known secondary structure (DSSP) S


SST
SS




S


S
SS
TT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence ANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILEESLCELVAKQLKQ
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Known secondary structure (DSSP) TT




SSSS

TTTT
TTSSTTS

TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence HQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFV
Predicted secondary structure






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Known secondary structure (DSSP)
STT
TTSSGGGGGG

TTTS
TT

S
TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence QVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMYNILMWIHDNYRDPESET
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Known secondary structure (DSSP) SSSS
STTSSTT

TT
TT


T


TT


 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence DNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNF
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Known secondary structure (DSSP)
STTS
S
TTTT
TTTS

SSSTTTT

TTS
TT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LLEMTSHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSF
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Known secondary structure (DSSP)



TT
TTTSS

SS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence FPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRPPDVLRWVELAKLYRSIGEYD
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Known secondary structure (DSSP)
STT
TTS



TTSS



TTTS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence VLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAE
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Known secondary structure (DSSP) TTTTTTS

SSTTTSSS
TTTTTS




SS


TTTTTTTT
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence WKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAI
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Known secondary structure (DSSP)
TTT
SSS

TTTTTTSSTTTTTS



SSSSSTTTTT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISK
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Known secondary structure (DSSP) TSTTT
TTS
SS
TTTTSS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence QGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLTDISSLIRSCKFSMKMKMID
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Known secondary structure (DSSP) STTTT
STT



TTTS




S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence SARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSS
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Known secondary structure (DSSP) TTT

TTGGGSSTTTS
SGGGGGGSSSSTTT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence YLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELDSEKVIAGLYQRAFQHLSEAVQ
Predicted secondary structure


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Known secondary structure (DSSP) TTTT
TTS
STTTTS



STT
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence AAAGVIDAYMTLADFCDQQLRKEEEQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMT
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Known secondary structure (DSSP)


SSTTTT



TS

SSSTT
STTS
SSSS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence KEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEF
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Known secondary structure (DSSP) SS

TTSTTSSSTTTSSTTTSS

TTSSSTTTTSTTSSS




SSTTT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence VARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKKNIEKMYERMYAALGDPKAPG
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Known secondary structure (DSSP) SS
SS
TTS
STTTTTS
TT

SSSTTTTTSSSTT
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence LGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEF
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Known secondary structure (DSSP) S


TTTTTTTTGGG



S

SS
S

S
SSGGG
TTTTT



S
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence LRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRV
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Known secondary structure (DSSP) SS




SS


SSS


TTSS






S



SSS





TTS



SS
T
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence EQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRA
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Known secondary structure (DSSP) TTTSTTT






TT


SS
S
TTSSTTS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence PPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHF
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Known secondary structure (DSSP) TS
SSTTTTTS

SSS
S
S
STTT
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence ASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPM
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Known secondary structure (DSSP) TTTTT




GGGTTTT





SS
SSS



SS


STTTTTSTTS
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence KETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQKI
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Known secondary structure (DSSP)
TTSSTTTTSSSTTSSS
SSS
SS

S

SSTTT


TTT
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence CYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLSEETQVKCLMDQATDP
Predicted secondary structure























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Known secondary structure (DSSP) TTSSB
TTTT
TT
S



SSS
TTSSS
SBS

S
 .........3580....
Sequence NILGRTWEGWEPWM
Predicted secondary structure








SS confidence













Known secondary structure (DSSP) TSS
SSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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