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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7fjnA_

Fold library idPDB HeaderMoleculeTitle
c7fjnA_3.25PDB header: viral protein/immune systemChain: A: PDB Molecule: spike glycoprotein,envelope glycoprotein;


Added to library: 3.25
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHNPVLPFNDGVYFASTEKSNIIRGWIFGTTL
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Known secondary structure (DSSP)


S


B
SSS



S


TT





TT


TT



SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence DSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVNCTFEYVSFKNLREFVFKNIDGYFKIYSKHTPINLVR
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Known secondary structure (DSSP) SSSS
TT




SSGGGG







SSS



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLPQGFSALEPLVDLPIGINITRFQTLAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKT
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Known secondary structure (DSSP) S

SS


B











TTS
TTS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFS
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Known secondary structure (DSSP) SS

S


SS









GGGTS
S


BSTT


SS



STTTS



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKV
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Known secondary structure (DSSP) SS
TTGGGS

BS
STTTTT
STT

SSSTTTTS


S



B
SSSS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence GGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSF
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Known secondary structure (DSSP) T







SS


SS








SSS

TT

BTT
S



TTS
STTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEIL
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Known secondary structure (DSSP)

SS


B










SSTT





TT


TTS

TTSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence DITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQ
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Known secondary structure (DSSP)




TTT



T

GGG

TTSS






STT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TSQSIIAYTMSLGVENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG
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Known secondary structure (DSSP)





S







SSS






T
S
GGGT
 .........640.........650.........660.........670.........680.........690.........700
Sequence SFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKSKRSFIEDLLFNKVTK
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Known secondary structure (DSSP) TTT
SS




SS

STT


TTTSB
TT



B


 .........710.........720.........730.........740.........750.........760.........770
Sequence FNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA
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Known secondary structure (DSSP)
SS


SS
TTGGGTSS




TTT

TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQID
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Known secondary structure (DSSP)
GGGGTGGGG

TTSS
SS

 .........850.........860.........870.........880.........890.........900.........910
Sequence RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLH
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Known secondary structure (DSSP) TSS


STTSSSSSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence VTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVN
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Known secondary structure (DSSP)



S
SSSSSSS
SSS
SSS



BTTTS
TTTSTT
 .......
Sequence c7fjnA_
Predicted secondary structure






SS confidence






Known secondary structure (DSSP)


B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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