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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7fi3D_

Fold library idPDB HeaderMoleculeTitle
c7fi3D_2.30PDB header: peptide binding proteinChain: D: PDB Molecule: abc-type dipeptide/oligopeptide transport system;


Added to library: Tue Jun 21 21:12:12 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SVLKTVIYSSSGALFXGVWNPSSSGYSDTYSRRIADLVFDSGIPYGIDGVPHPYHCHVVDYKSDVTVPED
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Known secondary structure (DSSP)


SS
S
SS


SSTTTT
S


SS
B
TTSSB

SS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AVIFNSTTDTWVAAHAGETAKTYARIECDRPYFHDGHKLSAADVXYSLAWSWEWTTQDGDDDPYYDASEA
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Known secondary structure (DSSP)
BTTTT
TTTTS


B
TTS
B

TS

STT
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence DWSGEYXNTILGIKLVEQTDDRXVFDVYHNHYFPASEIXTAAYVVPFTGTPWQLWYAXSELVAHNPKYSW
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Known secondary structure (DSSP) T
SS




TT
TSS



SS

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SESSEDVEQLDQINPSHAQAIKEKLLELKQSKPIPEFLKPYIEDENAATAAYDSIAKFXDEHNHAVIGQG
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Known secondary structure (DSSP) S


TT


TTS
SS
GGGGGG
S
TS



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PYYVDEYQPENLFVRIKKFDKWTIPAFAEPEYQVDPYYKTIEVYGIQNEDTAILEVANGHYDILWYPFAA
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Known secondary structure (DSSP) SGGGT
TT



TT

GGG





SS
TTSSSG
 .........360.........370.........380.........390.........400.........410.........420
Sequence YRFTGLSDEQRANIKLYRSTSAFGDIVWNPVHDQDNPYVITVGDKKYFNPFAVRKVRFAIQYXVNRAYIT
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Known secondary structure (DSSP) GGGTT

T




TT
TTTT
GGGSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QNIFQGSAGPXFTPWTSTETGFEYVRPVVDAFGLTEQSDEDLAXKLFEEGXQEAAQELAKXGYELKKGDD
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Known secondary structure (DSSP) TTTTTS
SSS

TTSTTTT

SS

TT


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GKWYFNGEPVKVVGLGRVEDERKDVATYIVEEVXKKLGFDAEAKIVDRRTASGTVYTSDPSSYQWNFYTE
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Known secondary structure (DSSP) S
TT
TTSTTTGGGT

TSS
GGG


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence GWVSSSNVKFSTTRIIQYYSSYWYAPGLVGWKWTPENTQRVTXEEVLKFLGNGDIQAGLDSLGLSYYNTV
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Known secondary structure (DSSP)
SS

SS
S
TSSSS
SSSSSS



TTTS



TTT
TT
SSS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence DKIQPLLNWTADDFALVIYSGEANGVKXDSEDKYWDFNRLGTAIGIYEGYRTFLYENWEFYAASKDIEIK
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Known secondary structure (DSSP) GGGTT

STT

S
STTS
 .........710.........720....
Sequence LVDPVAGLASDWAIRSARPVVEHH
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Known secondary structure (DSSP)

BTTTBTTST





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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