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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7eu1A_

Fold library idPDB HeaderMoleculeTitle
c7eu1A_3.86PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase iv subunit 1;


Added to library: Sat Jan 1 08:41:42 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAY
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TS


S
S
SS
TT
TTTS

STT


SSS


SSSS





B


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SIINPYFLKEVAALLNKIGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRERTRIYKKLVGFEGNTLELSSR
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Known secondary structure (DSSP)
B

TTSTTTTTTS





TTTTSS
SSS
S


SB


B


SS



SSSTTS
SS

SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VMECMQYSRLFSCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL
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Known secondary structure (DSSP) TTTTSSSS


TTS



SS
TTS
TTBB
TT





SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VTSIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQA
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Known secondary structure (DSSP) TT




TT

SS

SGGG



B


SS

GGGGTTTT

SSS



SSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKAS
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Known secondary structure (DSSP) TTTTBTTT

TTTTSS


S





STTTSSTTSSSSS




S
S
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence PSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGKVLDI
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Known secondary structure (DSSP) TT

S



GGGSS
TT

TTTT
SS
B



S

TTTSSSSS
TTTSSSSTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence IYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGE
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Known secondary structure (DSSP) TTTTT





S
SSSTT
SGGGTTTSSSS

 .........500.........510.........520.........530.........540.........550.........560
Sequence DKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQH
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Known secondary structure (DSSP) STTT
SSSTTSTTTTTTTSTTTGGGGTTSS
TT
TTSS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence SMCIGLQNSAVSLSFGFPRELTCAAWNDPNSPLRGAKGKTTTESYVPYGVIENSFLTGLNPLESFVHSVT
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Known secondary structure (DSSP) T


S


S



SS
SSS


STTSTTT















TTT


TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence SRDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDGPVEDITGEALGSLSACAL
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Known secondary structure (DSSP) TTTTS

TTTTTTTTTTT
TTSSTTT


S
SS


SSS




SS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLEIKNHLEKLS
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Known secondary structure (DSSP) T





SSSS

TT

S



SS




SGGGGSTTTTTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence FSEIVSTSMIIFSPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCS
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Known secondary structure (DSSP) GGGT



STTT

TTTTTSTTTTSSS


S



BS


 .........850.........860.........870.........880.........890.........900.........910
Sequence SDDQAMKDDNVCITVTVVEASKHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNLKV
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Known secondary structure (DSSP) SSS

S
S




SSS



TTTTTSSS
SS


SS
SS






 .........920.........930.........940.........950.........960.........970.........980
Sequence TMYGDRGKRTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLL
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Known secondary structure (DSSP)




SSTTTSTT
S



SS


SST



TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVP
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Known secondary structure (DSSP) SSSSSS


SSSTTTT


TTGGGTTS
STTT
S
STTT


 .........1060.....
Sequence GFGTGDQFEIIISPK
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Known secondary structure (DSSP) SSTTSSS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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