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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7eu0B_

Fold library idPDB HeaderMoleculeTitle
c7eu0B_3.16PDB header: transcriptionChain: B: PDB Molecule: dna-directed rna polymerases iv and v subunit 2;


Added to library: Sat Jan 1 08:49:21 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSWRYATVKFGEVT
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Known secondary structure (DSSP)

SSS
TTT
S
TS




B





B
 .........80.........90.........100.........110.........120.........130.........140
Sequence VEKPTFFSDDKELEFLPWHARLQNMTYSARIKVNVQVEVFDILIGSIPVMVKSILCKTSEKGKENCKKGD
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Known secondary structure (DSSP)



SSS

TT







BTTSSS
SSTT

SSTTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence CAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLT
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Known secondary structure (DSSP)
SS




SSSS

SSS
TTT

SSS




TT

SS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence VYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQI
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Known secondary structure (DSSP) SS


BTTT

SS





STTTTSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KSTKFPPAESVDECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLER
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Known secondary structure (DSSP) TSSS

SS
TS
TT

STTTTSS



TTSSTTSSTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence EIRVHLAHARRKMTRAMQKHLSGKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANP
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Known secondary structure (DSSP) TGGGT



TTTTS
S


TT
SSS

S


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LQTLIDLRRTRQQVDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFACGMEEL
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Known secondary structure (DSSP) TS




SS

GGGTTTB
SS



STTTTTSB
TT
B





S

TTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence MDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRP
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Known secondary structure (DSSP)
S
SSS

SS
TTS
STTTSS
SS
TTTT
STT

 .........570.........580.........590.........600.........610.........620.........630
Sequence LLVVENLQKLKQEQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCAV
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Known secondary structure (DSSP)
STTTTSSS




TTSTTTTTTS

BS
SSSTTTS



S
B
S
GGGGS
TTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence VPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAI
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Known secondary structure (DSSP) STTTTTS
T





S
TTS


SSS



SSB
S

GGG

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence VAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDVQFGKTHDSLEDDGFPFIGANMSTGDIVIG
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Known secondary structure (DSSP)


TTTTTTT
TTTTT



B





B
TTSSB
TT

TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence RCHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQ
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Known secondary structure (DSSP) B




SS


TTS



TT
BTTS


B
GGGS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence GIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGN
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Known secondary structure (DSSP) S


S
TTT

SS




SS


B

GGG


TTS
TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
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Known secondary structure (DSSP)

TTT

B
SS



S

GGGS



SS

B
TTT

B


SSS






 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AHGASANLHERLFTLSDSSQMHICRKCKTYANGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNF
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Known secondary structure (DSSP) TTT

TTTTSS
B

SSS
SB





SSSSSSSS

BTTTT




 ....
Sequence DTKL
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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