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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7emfN_

Fold library idPDB HeaderMoleculeTitle
c7emfN_3.50PDB header: transcriptionChain: N: PDB Molecule: mediator of rna polymerase ii transcription subunit 14;


Added to library: Sat May 8 08:55:20 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RLSTLIEFLLHRAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMIS
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Known secondary structure (DSSP)
TTTS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SFLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQ
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Known secondary structure (DSSP) TTTTTT





TSSS


S
TS





ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence ATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKET
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Known secondary structure (DSSP) TTS



SS
B


GGG


TTT
S
SSS





TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQVERY
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Known secondary structure (DSSP) S
SS
SS
T
SSTT
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence HAGKCLSLSVWNQQVVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHAR
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Known secondary structure (DSSP) TTTS
S




SS
TTS


TTT




TT

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence AHQKLQELKAILRGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDM
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Known secondary structure (DSSP)
SS


TTTTSSSS

SSS
TTT


SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence EKSVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQY
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Known secondary structure (DSSP)
GGGTTTSSSSS



B

SSSTTTTS
S
SSS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence YIVVEMLEVPNKPTQLSYKYYFMSVNPAMALLLQQFKENMCAFNKVLAHFVAMCDTNMPFVGLRLELSNL
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Known secondary structure (DSSP)
SS
TT



B

B






S
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence EIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGT
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Known secondary structure (DSSP) T

B

SB

SSSS

BBS




SSS
TTTSGGG
S
S


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence STREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYN
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Known secondary structure (DSSP) SS

SSS


SSS
SS
SSS

SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence YRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFD
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Known secondary structure (DSSP) SS
TTTT
TTTT
SSSS
SS
S
TTSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence TQAPLNAINKLPTCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGL
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Known secondary structure (DSSP) TTS



STTTTTTTT

SSB
SS
TTSB
SS



TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence KTFLNMFVSWAASIPTILTHSALNILLLPSPTPYLCSPLERFLGSVIMRRHLQRIIQQEQLINSNEPGVI
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Known secondary structure (DSSP)


TTSS


SS
B




B









SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence MFKTDALKCRVALSPKTNQTLQLKVPDELQVLEKFFETRVAGPPFKANTLIAFTKLLTHILRDCVHIMKL
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Known secondary structure (DSSP)

SSS

SSSSS



TS
TT




 .........990.........1000.........1010.......
Sequence ELFPNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFL
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Known secondary structure (DSSP)






SSS


SS
S

B
SSS
SB

B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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