Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7emfA_

Fold library idPDB HeaderMoleculeTitle
c7emfA_3.50PDB header: transcriptionChain: A: PDB Molecule: mediator of rna polymerase ii transcription subunit 1;


Added to library: Sat May 8 08:53:31 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LSKMSSLLERLHAKFWSETIKLVRQVMEKQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSA
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)




GGG

S
T
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGTECYITSDMFYVEVHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) SS

SS



S





TT
S

SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDIILHENNVSRSLGMNA
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)



SSSS


BTTB


S






S


SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFNSVDLPACFFLKFPQPIPVSRAFVQKLQNCTGIPLFE
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)
SS


SS
S
SS

TTS









S
S
S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHP
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) S



TTS

SS



TT
SS


TT


TTSS

SSG
 .........360.........370.........380.........390.........400.........410.........420
Sequence GRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQD
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) GGTT





TT
SS

TT
SSSSS
S
 .........430.........440.........450.........460.......
Sequence STHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETI
Predicted secondary structure














SS confidence














































Known secondary structure (DSSP) SS


SS









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D