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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7elaA_

Fold library idPDB HeaderMoleculeTitle
c7elaA_3.40PDB header: viral protein/rnaChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat May 8 08:53:47 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEEDIACVKDLVSKYLANNERLSRQKLAFLVQTEPRMLLMEGLKLLSLCIEVDSCNANGCEHNSEDKSVE
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Known secondary structure (DSSP)
S



STT


T


S


 .........80.........90.........100.........110.........120.........130.........140
Sequence RILHDHGVLTPSLCFVVPDGYKLTGNVLILLECFVRSSPANFEQKYVEDFKKLEQLKEDLKSVDINLIPL
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Known secondary structure (DSSP) TTT



S





STT
SSTTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence IDGRTSFYNEQIPDWVNDKLRDTLFSLLKYAQESNSLFEESEYSRLCESLSMTESLNALLDNRSNHYEEV
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Known secondary structure (DSSP) SS


SSS
TTSSS

S






S


 .........220.........230.........240.........250.........260.........270.........280
Sequence IASCHQGINNKLTAHEVKLQIEEEYQVFRNRLRKGEIEGQFLKVEKNQLLNEFNNLYADKVAEKDSVEHL
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Known secondary structure (DSSP) TTTT





TSS




TTTTTTS
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence THQFKRASPILRFLYANISECQMQCWRSFLNKVKSMRILNTRRKLLLIFDALILLASKHDQVRKKPLRGW
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Known secondary structure (DSSP) TTSSSS





STTTTSSS
T


SSB
 .........360.........370.........380.........390.........400.........410.........420
Sequence LGTCFVSVNDRLVSLESTKKDLKKWVERRQQVECPSKNQILNSIFQKTISKATTALRDVGISVDHYKIDM
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Known secondary structure (DSSP)
SS
STTB




SSTTT

GGGG


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence EVICPDGYDLIMDFDVSGVTPTISYQRSEEEAFPYIMGDVDLLKTTDLERLSSLSLALVNSMKTSSTVKE
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Known secondary structure (DSSP) T


TTT










SS


GGG
SS
S



TTSTTT






 .........500.........510.........520.........530.........540.........550.........560
Sequence AYCQEFSLGETEFQLIYQKTGECSKCYAINDNRVGEVCSFYADPKRYFPAIFSAEVLQTTVSTMISWIED
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Known secondary structure (DSSP)

SSSSS
SSS
TTT
GGG

TTSS
TGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence CNELEEQLDKIRSLTKMILILILAHPSKRSQKLLQNLRYFIMAYVSDYYHKDLIDKVREELITDVEFLLY
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Known secondary structure (DSSP) GSSSTTTS

SSSTT




TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence RLLRTLMGLVLSEDVKSMMTNRFKFILNISYMCHFITKETPDRLTDQIKCFEKFLEPKVKFGHVSINPAD
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Known secondary structure (DSSP) T
SS

S
GGGGS
SS
SST


BS

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence TATEEELDDMVYNAKKFLSKGGCTSAKGPSYKKPGVSKKYLSLLTSSFNNGSLFKQESPQSYNSVGPDTG
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Known secondary structure (DSSP) S

TT


TTSSS


TT
S


TTTS



S


SS
SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence RLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEALSSQLSGSCLNNEKEFENAILSMKLNVSMAHV
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Known secondary structure (DSSP) S


SSS

SSS

SS
TT

 .........850.........860.........870.........880.........890.........900.........910
Sequence SYSMDHSKWGPMMCPFLFLTVLQNLIFLSIKGRDYLSTLLMWHMHKMVEIPFNVVSAMMKSFIKAQLGTK
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Known secondary structure (DSSP) BTT

T





TTS





 .........920.........930.........940.........950.........960.........970.........980
Sequence QSITEDFFYSNFQIGVVPSHISSILDMGQGILHNTSDFYALITERFINYAISCVCGGTIDAYTSSDDQIS
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Known secondary structure (DSSP)

TTT



BB

SS


TTTTS


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LFDQTLTELLHRDPEEFRALMEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFFVWGDEVPLLTKFVAAAL
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Known secondary structure (DSSP)

TT

B
TT
SS
TTSSSS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence HNIKCKEPHQLAETIDTIVDQSVANGVPVHLCNLIQIRTLSLLQYARYPIDPFLLNCETDVRDWVDGNRS
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Known secondary structure (DSSP)


SS
T

TT



TTS

SS

SSTTTS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence YRIMRQIEGLIPDACSKIRSMLRRLYNRLKTGQLHEEFTTNYLSSEHLSSLKNLCELLGVEPPSESDLEY
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Known secondary structure (DSSP)
TTSSS

TTS

S



STTT

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SWLNLAAHHPLRMVIPTIVKTIQNSSIASGFVGLCRTLGSKCVRGPNKENLYIKSIQSLITGTQGIELLT
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Known secondary structure (DSSP)
TTSSS






ST



TTSS

TTS

T
SS


B
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NSIGVQYWRVPLGLRNKSESVVSYFRPLLWDYMCISLSTAIELGAWVLGDPKTTNPCDYFPLKPTASKLL
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Known secondary structure (DSSP)
SS


BB


STTTTSSS
GGGGS
SGGGS



TT






SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EDRVGLNHIIHSLRRLYPSVFEKHILIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSELRFSHT
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Known secondary structure (DSSP)
TT
SS
T
TT



TTSSTT

S

TTTTS



SSTS
 ..
Sequence RT
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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