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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7e94U_

Fold library idPDB HeaderMoleculeTitle
c7e94U_4.67PDB header: transport proteinChain: U: PDB Molecule: trafficking protein particle complex ii-specific subunit


Added to library: Sat Feb 12 08:36:32 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RSQQKSLGRQMKILGNFQLLAGRYVDALNSFVDAITTLYKVRDYLWLGSALDGISICFLLLSYRNSISIA
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Known secondary structure (DSSP)
TSSSS
SS


S

SS


STT
SS


STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AMQSPRNSIMSLSAPALNIDVENINLPLLIKCISDKVLYYYDLSLMHNSEYAPQVVYCEFLLKTLTFMTS
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Known secondary structure (DSSP) TTTTS
TT



STS




STTTS




S
SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence CYKSSEFSKDVLDNIVKNQHRALSDIPNSPMFPRFEVYFYSNKLFELQLKEMQVEAQIKIYSTMAEVYRL
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Known secondary structure (DSSP) SSS

SGGGS
TTTTSS


S
TTTTT



S



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LGYKRKQLFVLRLLMVALLATPNKIAWHPDYRTLIDTIIELLNINSTWLILQKKILQLCIKVSRKINDFE
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Known secondary structure (DSSP) TT


S




TTTTTT




T
 .........290.........300.........310.........320.........330.........340.........350
Sequence YVAKFSSILITKYTHLLNQSEQDALFKEYIQPSITNESITSYWDPFILREVVINRILDSDPTSNEIPAEF
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Known secondary structure (DSSP)

SS

STTTTSSSSTTTTTT


S
S
S

B


B





SSS
S
S




 .........360.........370.........380.........390.........400.........410.........420
Sequence TCRVQNPFKFDFTINDIQLDEEISEFCEIDRKAVSYSGPYNVKAESIRSITLPLIIKKPTYKKIYEISCL
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Known secondary structure (DSSP)


S


B

B


S

S

B

SSSS






SB

SSS















S


B


 .........430.........440.........450.........460.........470.........480.........490
Sequence KISILKLPLQKFDIINDSRRSNPVEEEAEKMTRNSWMMLDGTKTDFHITVRNKSLSCAINHIKIIPMNNI
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Known secondary structure (DSSP) SS







TTS


B











SS











SSTTT


SS






TTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence EQMLKPDYWKKMPPDDLYIMEKQLDWLSKSCVRIIKLITFDLELDNTAVPFNFTGFDLLIEYGMSATDES
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Known secondary structure (DSSP) TT

S
TTS
SS
S

GGGSS


B







SS





TTS

SS








TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence CIYLKKLSIPYEVTLRRTIEVPSMDIIPLNELFSSQVENVDWIEYVMSKIRAESNLHSRDFILLLLDFRN
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Known secondary structure (DSSP)
S



















TTSTTSTSS
TT

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence SWIDGIKLNVQFEDFTSNEYHVEASHTSRIIVPIKKIDYKKYNFENTPIPRIFPGRQFIQSGLNEEQTIE
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Known secondary structure (DSSP)
SSS
B

SSS






B
SS



TTS








S









SSTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence MRQKFWCREHIISKLKCNWKLTTDQSVTGSVDFNKFIEKFDHKMVYTIYPGRLFYGVQLLLDEPKVKVGE
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Known secondary structure (DSSP) TT
B
BTTT



B



TTT




STT
TTSSS
S
S
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence IINLKIITEPTSTCRRKQNSTVNFLDIVIFDSKTSKILPRSNRRILYNGSLTKPISTTKVSEINLEIIPI
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Known secondary structure (DSSP)



GGGTTT
S
S

SSS



SS
TTT
SS
S


SSS

B



 .........850.........860.........870...
Sequence EKGRYEFSVCISKSNNQDGIIQFDSENVILSVI
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Known secondary structure (DSSP) S



SSSSTT


B






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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