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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7e7qA_

Fold library idPDB HeaderMoleculeTitle
c7e7qA_3.30PDB header: translocaseChain: A: PDB Molecule: retinal-specific phospholipid-transporting atpase abca4;


Added to library: Sat Jul 3 12:26:11 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MGFVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSHHECHFPNKAMPSAGMLPWL
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Known secondary structure (DSSP)
SSTTGGGGTTTS



B




GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence QGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQELLMNAPESQHLGRIWTELHILSQFMDTLR
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Known secondary structure (DSSP) TSS



SS

TTSSTT





S
TTSSSTTSSSTS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence THPERIAGRGIRIRDILKDEETLLLERFIIFSQSLSQGTLQWTLYANVDFFKLFRVLPTLLDSRSQGINL
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Known secondary structure (DSSP) SS


SS

SS








S




TTTTTS


TTSSSSSS


SS
GGGSS

SS



 .........220.........230.........240.........250.........260.........270.........280
Sequence RSWGGILSDMSPRIQEFIHRPSMQDLLWVTRPLMQNGGPETFTKLMGILSDLLCGYPEGGGSRVSYDRRT
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Known secondary structure (DSSP) SSSTTTTSTTTTTTTT


TTTT


STTT






SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence TSFCNALIQSLESNPLTKIAWRAAKPLLMGKILYTPDSPAARRILKNANSTFEELEHVRKLVKAWEEVGP
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Known secondary structure (DSSP)
TSTTT




TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence QIWYFFDNSTQMNMIRDTLVKDFLNRQLGEEEAILNFLYKGPRESQAWRDIFNITDRTLRLVNQYLECLV
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Known secondary structure (DSSP) TTS
SSSTTTTS


T

TTTS


S



GGGTTTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence LDKFESYNDETQLTQRALSLLEENMFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDS
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Known secondary structure (DSSP)



S
T

TT

TT

S

SS

GGGS

SS

S
SS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GPRADPVEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVL
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Known secondary structure (DSSP) S



TTTS
TSS
SS





B


SSTTTTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence AWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPF
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Known secondary structure (DSSP) SSTTTT

TTSS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ILFLFLLAFSTATIMLCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAVSLLSPVA
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Known secondary structure (DSSP) TT
SSTTTSGGGGSSSS

TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence FGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQVFPGDYGTPLPW
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Known secondary structure (DSSP) TT



TTSTTS
SSTT





TTSS



T
 .........780.........790.........800.........810.........820.........830.........840
Sequence YFLLQESDSFFEREHPGWVPGVCVKNLVKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT
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Known secondary structure (DSSP) T
TT





S



SSS

TTT
S



SSS
TTSSTTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence GLLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLE
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Known secondary structure (DSSP) TSS

SSSSSBTTT
GGG
SS



TTSBS


 .........920.........930.........940.........950.........960.........970.........980
Sequence DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDQPTSGVDPYSRRSIWDLLLKYRSGRTIIMST
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Known secondary structure (DSSP) T
TTTSSSBTTSS
SSSS

SSTTTT

TTTS
TT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKDVNELMDVVLHHVPEAKLVECIGQE
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Known secondary structure (DSSP) S
TS
SSSSS






TTTT

S

B



TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LIFLLPKHRAYASLFRELEETGLSSFGISDTPLEEIFLKVTEPECPGPQLNTGTQLVLQHVQALLVKRFQ
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Known secondary structure (DSSP)







BS












T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence HTIRSHKDFLAQIVLPATFVFLALMLSIVIPPFGEYPALTLHPWIYGQQYTFFSMDEPGSEQFTVLADVL
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Known secondary structure (DSSP)
TT










B

GGGS
S



S
S
TTTTTTTTTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LNKPGFGNRCLKEGWLPEYPCGNSTPWKTPSVSPNITQLFQKQKWTQVNPSPSCRCSTREKLTMLPECPE
Predicted secondary structure
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Known secondary structure (DSSP) TTSS
STTTT
SS
S
TTS













S


SS

S






TTS

SS



T
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence GAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGKLPVVPITGE
Predicted secondary structure



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Known secondary structure (DSSP) T
SSS




B
TTS

TTS
TTTTTSSS



B








S

S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ALVGFLSDLGRIMNVSGGPITREASKEIPDFLKHLETEDNIKVWFNNKGWHALVSFLNVAHNAILRASLP
Predicted secondary structure


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Known secondary structure (DSSP) T



TTSTTSS

S

TTSTTTTS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence KDRSPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFVPASFVLYLIQERVNKSKHLQF
Predicted secondary structure
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Known secondary structure (DSSP) TTS
GGG










TTSGGGGTTTTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence ISGVSPTTYWVTNFLWDIMNYSVSAGLVVGIFIGFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFL
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Known secondary structure (DSSP) T

TT
TTTSSTTTGGGTGGGGGT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FDVPSTAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLIDLALSQAV
Predicted secondary structure



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Known secondary structure (DSSP)
SSSTTTT

S
STTSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence TDVYARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFKTDILRLHELTKIYPGTSSPAVD
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Known secondary structure (DSSP) TGGGSS





TTSTTTT




S

TT
SS
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDEL
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Known secondary structure (DSSP)


TT





TTSSTSS

BS

SSS
BTTT

TTGGGG
SS



TT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDQ
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Known secondary structure (DSSP) S
TSS

TTTT

TTTTS
GGGS
SSTTSSS

SSS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence PTTGMDPQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYI
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Known secondary structure (DSSP)

SS

TTT



S
TTS
S

SSS
S




 .........1900.........1910.........1920.........1930.........1940.........1950........
Sequence VTMKINPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSLARIFQLLLSEEYSVTQTTLDQVFVNFAKQQ
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Known secondary structure (DSSP)

B


TTTGGGSSS

S
B




SS
B

B

S
S
GGG




B

S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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