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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7e7oA_

Fold library idPDB HeaderMoleculeTitle
c7e7oA_3.40PDB header: translocaseChain: A: PDB Molecule: retinal-specific phospholipid-transporting atpase abca4;


Added to library: Sat Jul 3 11:30:30 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MGFVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSHHECHFPNKAMPSAGMLPWL
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Known secondary structure (DSSP)

STTTSSTS


B




GGGBS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQELLMNAPESQHLGRIWTELHILSQFMDTLR
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Known secondary structure (DSSP) TSS



SS

TTSSSS




TTSTSS
SS


TS


 .........150.........160.........170.........180.........190.........200.........210
Sequence THPERIAGRGIRIRDILKDEETLLLERFIIFSQRRGAKTSLSQGTLQWLYANVDFFKLFRVLPTLLDSRS
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Known secondary structure (DSSP) S



SS

SS





S

S




S





ST

S



S
S
S




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QGINLRSWGGILSDMSPRIQEFIHRPSMQDLLWVTRPLMQNGGPETFTKLMGILSDLLCGYPEGGGSRVL
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Known secondary structure (DSSP) S


SS

TSSSSSSSSS
S
SSS



TTS




 .........290.........300.........310.........320.........330.........340.........350
Sequence SFNWYEDNNYKAFLGIDSTRKDPIYSYDRRTTSFCNALIQSLESNPLTKIAWRAAKPLLMGKILYTPDSP
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Known secondary structure (DSSP)



TTTT
SSSSS













TTS
S
SSTTTTS


S
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence AARRILKNANSTFEELEHVRKLVKAWEEVGPQIWYFFDNSTQMNMIRDTLGVKDFLNRQLGEEGITAEAI
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Known secondary structure (DSSP) TTTTTTSS
TTTTT



STSSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence LNFLYKGPRESQADNFDWRDIFNITDRTLRLVNQYLECLVLDKFESYNDETQLTQRALSLLEENMFWAGV
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Known secondary structure (DSSP) TS


S






STTS






SST



 .........500.........510.........520.........530.........540.........550.........560
Sequence VFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITR
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Known secondary structure (DSSP)
TT

TT

S

SS

GGGS

SS
SS
SB

SS



TTTS
TS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SQVQAEAPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV
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Known secondary structure (DSSP) TS









B

SSTTTTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMLCFLLSTFFSKASLA
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Known secondary structure (DSSP)
TTSSSSS
TTS
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence AACSGVIYFTLYLPHILCFAWQDRMTAELKKAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEG
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Known secondary structure (DSSP) TTGGGTTTTTSTTT

TTSTT


TTTSSSS
SSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence DEFSFLLSMQMMLLDAAVYGLLAWYLDQVFDSFFEREHPGWVPGVCVKNLVKIAVDRLNITFYENQITAF
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Known secondary structure (DSSP)







B



S
S
S



SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLK
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Known secondary structure (DSSP)
SSSSTTSS

SS

SSS

SSS
STTTTTT
SS



TT
B
 .........920.........930.........940.........950.........960.........970.........980
Sequence GKSQEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIW
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Known secondary structure (DSSP)

TT
STTSSSBSSSS
SSTT
SS

STTSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DLLLKYRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMDVNELMDV
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Known secondary structure (DSSP) TT
SS

S
TTT
SSSSS
TT







 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VLHHVPEAKLVECIGQELIFLLPNKNFKHRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEGPQ
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Known secondary structure (DSSP) TT

S



B

TT




SSS
SSSTTTT





TT



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LNTGTQLVLQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIVIPPFGEYPALTLHPWIYGQQ
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Known secondary structure (DSSP)


TTT
STTTTTSS

S






GGGS
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YTFFSMDEPGSEQFTVLADVLLNKPGFGNRCLKEGWLPEYPCGNSTPWKTPSVSPNITQLFQKQKWTQVN
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Known secondary structure (DSSP)
S
S
TTTTTTTTTTTSSS
STTSS
SS
S
SSS













TTS


SSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence PSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVN
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Known secondary structure (DSSP)
S






SS


SS



SS
SSS






TTS

TTS
TS
SS
BS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EQRYGGISIGGKLPVVPITGEALVGFLSDLGRIMNVSGGPITREASKEIPDFLKHLETEDNIKVWFNNKG
Predicted secondary structure
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Known secondary structure (DSSP)
S

B






STT



SSSSSSSB
SB

TTS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence WHALVSFLNVAHNAILRASLPKDRSPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFV
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Known secondary structure (DSSP) TTTSS
TTS
STT







SSSTTSSTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence PASFVLYLIQERVNKSKHLQFISGVSPTTYWVTNFLWDIMNYSVSAGLVVGIFIGFQKKAYTSPENLPAL
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Known secondary structure (DSSP) TGGG

TTT
TTTSSTTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VALLLLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLL
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Known secondary structure (DSSP) GGGGSS
S
TTTTSS


SSSG
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence IVFPHFCLGRGLIDLALSQAVTDVYARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFIV
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Known secondary structure (DSSP) GGSTTTTT





SSSSSSSTTTTTTT


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DEDDDVAEERQRIITGGNKTDILRLHELTKIYPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKML
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Known secondary structure (DSSP)

TT

SSSTT
S



B




TT
SS
SS







TT





TTS

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSI
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Known secondary structure (DSSP) TSS

TT
B
BSSS
BTTT

SSGGGG

SS



TTS
S


GGG
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence KSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGRAVVL
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Known secondary structure (DSSP) T
STTTTS
TTSS
SSS
S

SS
S
SS

TTT

 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence TSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKILPDLNPVEQFFQGNFPGSVQRERH
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Known secondary structure (DSSP)

S
S
S
B

B
SSSB


B
T








SSTT




B
 .........1970.........1980.........1990.........2000...
Sequence YNMLQFQVSSSSLARIFQLLLSEEYSVTQTTLDQVFVNFAKQQ
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Known secondary structure (DSSP) SS


S


TT











Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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