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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7dvq1_

Fold library idPDB HeaderMoleculeTitle
c7dvq1_2.89PDB header: splicingChain: 1: PDB Molecule: splicing factor 3b subunit 1;


Added to library: Sat Apr 3 08:53:04 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PGYHAPVALLNDIPQYDPFAEHRPPKIADREDEYKKHRRTMIIPERLDPFADGGKTPDPKMNARTYMDVM
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Known secondary structure (DSSP)

SS

S




GGGGTS


TTTS

TTGGGGGT




B

TT



SS


B
 .........80.........90.........100.........110.........120.........130.........140
Sequence REQHLTKEEREIRQQLAEKAERNRPLSDEELDAMFPEGYKVLPPPAGYVPIMTGFHMQTEDRTMKSVNDQ
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Known secondary structure (DSSP)

TTS


GGGS
TT






SS













S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
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Known secondary structure (DSSP)
SSS




GGGTTTSGGGTS


TTTS


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISN
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Known secondary structure (DSSP) T
TT

SSSTTGGGGGGGG
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQ
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Known secondary structure (DSSP)
SGGGS
SS
S

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence QIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHR
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Known secondary structure (DSSP) GGGGGGGGGGTT
SSTTTS
TTTSTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence GKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTE
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Known secondary structure (DSSP) SSS
TS


STTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence ILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNL
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Known secondary structure (DSSP) TTSSTTTTTS
GGGGG
S
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence GAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
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Known secondary structure (DSSP)
STT

TT

S

TGGGGGGGTTSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPR
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Known secondary structure (DSSP) TTT
GGG
SS
SSS
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG
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Known secondary structure (DSSP) GGGGG



GGGS
TTSGGG
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIG
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Known secondary structure (DSSP) GGG
S
S
GGGSS
G
 .........850.........860.........870.........880.........890.........900.........910
Sequence EMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQA
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Known secondary structure (DSSP) GGGGGST
SSSTTSS
GGGGG


 .........920.........930.........940.........950.........960.........970.........980
Sequence VMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYE
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Known secondary structure (DSSP)
GGGTT
S
TTTGGGGT






SS




TT
 .....
Sequence LDYIL
Predicted secondary structure


SS confidence




Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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