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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7cz9A_

Fold library idPDB HeaderMoleculeTitle
c7cz9A_1.85PDB header: membrane proteinChain: A: PDB Molecule: efflux pump membrane transporter;


Added to library: Sat Sep 25 09:23:28 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDFSRFFIDRPIFAAVLSILIFITGLIAIPLLPVSEYPDVVPPSVQVRAEYPGANPKVIAETVATPLEEA
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Known secondary structure (DSSP)

TTSGGGS
B
SS
S
S


TT

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence INGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRVAQAEARLPEDVRRLGITTQKQSPTLTL
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Known secondary structure (DSSP) TT
TT
TTS
TT

GGGS






 .........150.........160.........170.........180.........190.........200.........210
Sequence VVHLFSPNGKYDSLYMRNYATLKVKDELARLPGVGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAM
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Known secondary structure (DSSP)
TTSSS
TTSTTSS


TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence QEQNVQVSAGQLGAEPLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL
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Known secondary structure (DSSP) S





S
S

SS

S









ST

TTS
GGGTS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSIRAVVQTLLEA
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Known secondary structure (DSSP)

TT
TT
BTT

TT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVE
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Known secondary structure (DSSP)

TT

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence RNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINSLTL
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Known secondary structure (DSSP) TT

GGGGG

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence SPALAALLLKPHGAKKDLPTRLIDRLFGWIFRPFNRFFLRSSNGYQGLVSKTLGRRGAVFAVYLLLLCAA
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Known secondary structure (DSSP)


TTS


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GVMFKVVPGGFIPTQDKLYLIGGVKMPEGSSLARTDAVIRKMSEIGMNTEGVDYAVAFPGLNALQFTNTP
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Known secondary structure (DSSP) S
B
SS




S

TT

TSTTTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence NTGTVFFGLKPFDQRKHTAAEINAEINAKIAQIQQGFGFSILPPPILGLGQGSGYSLYIQDRGGLGYGAL
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Known secondary structure (DSSP)

GGG
SS
TT

SS


SSTTT

SSS
S


 .........710.........720.........730.........740.........750.........760.........770
Sequence QSAVNAMSGAIMQTPGMHFPISTYQANVPQLDVQVDRDKAKAQGVSLTELFGTLQTYLGSSYVNDFNQFG
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Known secondary structure (DSSP) TSTT



B
S




TT


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence RTWRVMAQADGPYRESVEDIANLRTRNNQGEMVPIGSMVNISTTYGPDPVIRYNGYPAADLIGDADPRVL
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Known secondary structure (DSSP)
GGGSSS

TTS
GGGG
SSTT


TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence SSSQAMTHLEELSKQILPNGMNIEWTDLSFQQATQGNTALIVFPVAVLLAFLVLAALYESWTLPLAVILI
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Known secondary structure (DSSP)
S
TT



TT
SSTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence VPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARELEIQGKGIMEAALEACRLRLRPI
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Known secondary structure (DSSP) T

B
TT

 .........990.........1000.........1010.........1020.........1030.........1040.
Sequence VMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGMLGVTLFGLFLTPVFYVTLRKLVTRR
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Known secondary structure (DSSP) TTS

STT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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