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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7cklA_

Fold library idPDB HeaderMoleculeTitle
c7cklA_3.88PDB header: viral proteinChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat May 8 08:59:07 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEEDIACVKDLVSKYLANNERLSRQKLAFLVQMLLMEGLKLLSLCIEVDSCNANGCEHNSEDKSVERILH
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Known secondary structure (DSSP)
S


SSST

TT


S


 .........80.........90.........100.........110.........120.........130.........140
Sequence DHGVLTPSLCFVVPDGYKLTGNVLILLECFVRSSPANFEQKYVEDFKKLEQLKEDLKSVDINLIPLIDGR
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Known secondary structure (DSSP) TT



S





STT
SSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TSFYNEQIPDWVNDKLRDTLFSLLKYAQESNSLFEESEYSRLCESLSMTSGESLNALLDNRSNHYEEVIA
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Known secondary structure (DSSP) SS


SSS
TT
SS

S








S


 .........220.........230.........240.........250.........260.........270.........280
Sequence SCHQGINNKLTAHEVKLQIEEEYQVFRNRLRKGEIEGQFLKVEKNQLLNEFNNLYADKVAEKDSVEHLTH
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Known secondary structure (DSSP) TTSS





TTTSS




TTTTTT

S


 .........290.........300.........310.........320.........330.........340.........350
Sequence QFKRASPILRFLYANISECQMQCWRSFLNKVKSMRILNTRRKLLLIFDALILLASKHDQVRKKPLRGWLG
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Known secondary structure (DSSP) TTSSTT





TTTT

SS
T


SSB
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence TCFVSVNDRLVSLESTKKDLKKWVERRQQVECPSKNQILNSIFQKTISKATTALRDVGISVDHYKIDMEV
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Known secondary structure (DSSP) SGGG




SSTTT

GGGG


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ICPDGYDLIMDFDVEAFPYIMGDVDLLKTTDLERLSSLSLALVNSMKTSSTVKEAYCQEFSLGETEFQLI
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Known secondary structure (DSSP)

TTT





SS
S



TTSTTT








SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence YQKTGECSKCYAINDNRVGEVCSFYADPKRYFPAIFSAEVLQTTVSTMISWIEDCNELEEQLDKIRSLTK
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Known secondary structure (DSSP)


SSS
TTT
GGG

TTSS
STGGGSSSTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence MILILILAHPSKRSQKLLQNLRYFIMAYVSDYYHKDLIDKVREELITDVEFLLYRLLRTLMGLVLSEDVK
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Known secondary structure (DSSP) S

SSSTT




TTT
SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence SMMTNRFKFILNISYMCHFITKETPDRLTDQIKCFEKFLEPKVKFGHVSINPADTATEEELDDMVYNAKK
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Known secondary structure (DSSP) S
GGGGS
SS
S
T


B


SS

 .........710.........720.........730.........740.........750.........760.........770
Sequence FLSKGGCTSAKGPSYKKPGVSKKYLSLLTSSFNNGSLFKNKLTALAVSQLTEVFSRDYEYKVQQAMSNLV
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Known secondary structure (DSSP) TTT


TTSSS


TT




TTTS




G
 .........780.........790.........800.........810.........820.........830.........840
Sequence LGSKQHDEILLDGGASTQLKETVEKIVDQYREPVTTAMLKNLCFYSQESPQSYNSVGPDTGRLKFSLSYK
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Known secondary structure (DSSP) GGGG


T

TT



STTTTTT

S
S


SS
SSS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence EQVGGNRELYIGDLRTKMFTRLIEDYFEALSSQLSGSCLNNEKEFENAILSMKLNVSMAHVSYSMDHSKW
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Known secondary structure (DSSP)

SSS

TSS


SS
TT

BTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence GPMMCPFLFLTVLQNLIFLSIKGRDYLSTLLMWHMHKMVEIPFNVVSAMMKSFIKAQLGTKQSITEDFFY
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Known secondary structure (DSSP)

T





TTS







 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SNFQIGVVPSHISSILDMGQGILHNTSDFYALITERFINYAISCVCGGTIDAYTSSDDQISLFDQTLTEL
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Known secondary structure (DSSP) TTT


SBB

SS


TTTTS


SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LHRDPEEFRALMEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFFVWGDEVPLLTKFVAAALHNIKCKEPH
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Known secondary structure (DSSP)
TT

B
TT
SS
TTSSSS






SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QLAETIDTIVDQSVANGVPVHLCNLIQIRTLSLLQYARYPIDPFLLNCETDVRDWVDGNRSYRIMRQIEG
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Known secondary structure (DSSP) T

TT



SSS





SSTTTS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LIPDACSKIRSMLRRLYNRLKTGQLHEEFTTNYLSSEHLSSLKNLCELLGVEPPSESDLEYSWLNLAAHH
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Known secondary structure (DSSP) STTSSS

TTS

S



STTT


TTSSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence PLRMVIPTIVKTIQSSIASGFVGLCRTLGSKCVRGPNKENLYIKSIQSLITGTQGIELLTNSIGVQYWRV
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Known secondary structure (DSSP)






ST


TTSS

TTS

T
SS


B

SS


BB

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PLGLRNKSESVVSYFRPLLWDYMCISLSTAIELGAWVLGDPKNHIIHSLRRLYPSVFEKHILPFMIKFLD
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Known secondary structure (DSSP)
STTTTSSS
GGGTS
SGGGS



T
TTS
S



TT
 .........1410.....
Sequence LCVALDVNCEALSLV
Predicted secondary structure








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Known secondary structure (DSSP) SSTT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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