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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7biiB_

Fold library idPDB HeaderMoleculeTitle
c7biiB_3.04PDB header: ligaseChain: B: PDB Molecule: e3 ubiquitin-protein ligase huwe1;


Added to library: Sat Jul 31 09:01:13 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPMKIPGKQISNTIKQLSNLPEEELPTYLNNIYEWRCAKTDLLYWVDVLDRFDEILKAVVTEYGLGQFQN
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Known secondary structure (DSSP)






SS
TTT

S

S

TTTT
SSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence KPMKESDKEMVYAILKFQKLLVENSSNKSMFSSFDVVEPFIYSFELDLAIEALYLVSFFASKIHIQRSIK
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Known secondary structure (DSSP)
S

T
GGG


GGGTTSS
TSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TSMALMKMETLKTLIERVKEKPQSMYTYYDETTNNCKRVSIKKAVKKGIYSPSQEIRRFIHAIRLHEMAE
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Known secondary structure (DSSP) TTS
SGGGGGT
S


SS

S


TTT









SS



TTT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence QHEKLKIIRMLAFSALVYYNYTDLPIDSEFISRDLPETLAIINTESYQMREAAVTMIDAIFRMRIRHSAV
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Known secondary structure (DSSP) S
SSSS


TS
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IAAMNAQSHEGMIMNLLKKVVNEDVPEHFAIVFFNFLSSCFASGPCVSALFSAGIVQYVCNTLRDQPDIS
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Known secondary structure (DSSP) TTTSTT
S


TTST
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YRKRMRLVMGANTFLFTLPAPFTWFISENGIRILSKELLLAVDVALGNIKDHDLLMYINSIMKIISQLFK
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Known secondary structure (DSSP)
TTTTS


 .........430.........440.........450.........460.........470.........480.........490
Sequence NAGTAEAMRGFLEGEFPRAISLILFHSEEFTPSILAYLFSAVGDYIHNEPSNLPFIIEAGIFDGFVMCMK
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Known secondary structure (DSSP) SSTTGGGGGSTTTSSTGGGS

GGGTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KELPESPDFLLELPNLIEAFFLNSELIKKIDEENILDRIFESFEIVNLSNIILMYDIGRAYGIFLENLVR
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Known secondary structure (DSSP) S


S
TTSTTTTGGGG
TTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence HYPIISLTVKEKIYNTMKNLESMIPNTDPELMRLLLGNLFRMMHRAVYRKTTNNQLITDKGLLNNRIISM
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Known secondary structure (DSSP)
TTTTTTS
SS
SSTTGGGT

 .........640.........650.........660.........670.........680.........690.........700
Sequence LMLIEIPTETELYTDVMNILMEVFDEDQTYVISYIAKVIDRVMKNKVTLENIEKIKRILLIVNYLIFKNE
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Known secondary structure (DSSP) TTS


TTS
S


S

 .........710.........720.........730.........740.........750.........760.........770
Sequence ETCEEFIKHCTSKGFLQIVKRISQYFDNLKKDTALVSVAKNESLTNLYYSFTMGILKTVYRYSKTNAKEY
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Known secondary structure (DSSP) S

STTT
TTTS
STT

 .........780.........790.........800.........810.........820.........830.........840
Sequence LKIFGLLVEDLLSKTEQIDHLYYTQRMHGLKNYIMVDKSPQQNEFVVTQEYLMGINLSETLMEHAKNSVS
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Known secondary structure (DSSP) TTSS
TTSTTS







SSTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence MLKDEKITMDAHKKVVSSILEVLSIYVRGIKNLFVPVKEPKKKVCEIEEHVLIIVELLMDYIDKSSIEHL
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Known secondary structure (DSSP) TT
S
SSTTTT


SS

TSTT

TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LNIVKTAFFVTLRKQITKEMDRENEGSAEYKRRNILGSFFISVFLNLPKEETEAVLKSDIFTILVKNKKT
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Known secondary structure (DSSP) TTT
S
STSSTS
GGGTT
TTTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FKQVYNKNCFGLLQYAAIKESRVFSHLVSFIPKMTKQVGASTDPAFLKLYAVGLVFVAMRDTLKKTTVLS
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Known secondary structure (DSSP) TT

GGGSTT


TTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RFIGNIVFAESTCPAVVEAQGIVILAIVKLKIEYNLAITIEDPIIHLNRIYAIVETAEQKEGLVILANLL
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Known secondary structure (DSSP)







S



SSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IRRVIESKEAAKEAVDTIIKNKHLGKSRMYTVHTVCSNLRNALFYSISSFLEYLSSNFECISAGWEEIRH
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Known secondary structure (DSSP)

T





T
S




TTT




 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence KKQIKIYSGLNAELFRTLFVHRATGKMEQIVRIHSLCLLVVSFPQLISTLVPEDYSFFMYFLENHAAYSK
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Known secondary structure (DSSP)






S


TT


SS
GGGGGGS
GGGGGGGTTS
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SLKPSAFQQEDKTLAYWSGHFIMLIFNHTTYVEVKKYILEKVLELLPTSINATVIFSELIQEILTMRFSK
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Known secondary structure (DSSP) SS

TT




GGG
S
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence NTFDENTALVKEMNCLEVMIRSTMQIDNRRKDYGSIMEILTKPMEYITRILAVDEKEAFYEEVTEQSSSE
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Known secondary structure (DSSP) TT

S
TT
ST




 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence QSEKNEFLKSLCILPISKLIGKEMEIFNADERMPFVQKILEGSIISNLIAEREAAASVPIDIVFGLIHMV
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Known secondary structure (DSSP)





S
S










SS
T
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LQCGNRRNLYRIIHNISANKEVRIFSVETLVNSIYQAVVEGASIAPEVITKRGFEALTYLCTKSSDFTTV
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Known secondary structure (DSSP)
S

TTSTTTT


TTSTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FSYNTELINKILQATNKRTISESVKLLSTVGDCFNNDKVAEPENIEVRKYIGFLEYDMTDDTFKHFCEFI
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Known secondary structure (DSSP) SS

TTTTTT

S
GGGS
TGGGGS


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence KKTDRFYRPMYLLYLMGGSKKSLEECLDKKAEFNSHTHHKGIIKLVRMLSLVNIMGITETYLDSLMELRE
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Known secondary structure (DSSP) TGGG

TTTT
B
STTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence MPFWEYYFNIILPKEKESLYASSILPLFKAFVIVHTIQMYIGRNENINEFSEIPNSDSSIYYSVVEKEKD
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Known secondary structure (DSSP)
TS



SSS




SS

S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LINTFIQADPDLLFHAFAGLQKKILDFDNKRIYFYKKIREDVQLRPTISLMVQRGAVFEDTFHQLMRLNG
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Known secondary structure (DSSP)
GGGTTTTTTTS
GGGS
TS





STTTTS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence EQVRNAKFNIKFAGEEGVDAGGLTREWYSELSKEMFNANYALFTPIGSSYQPNHISHINPEHLVYFKFIG
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Known secondary structure (DSSP)
SS


S
T
TTT

TT

TTTS
GGGG
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence RIIGKAVYDEMTVDCHFTRAFYKRVLSIPVDLTDVEALDPEFHRSLVWILENDIENVLDMTFSIEQDRFG
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Known secondary structure (DSSP) TT





B
TT




S

TTTS

BSS

SSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ITEIIDLKENGRNIAVTNENKREYVELVCRFKLVRVIERQLSAFAEGFFEILDVDMLKMFNEKELELLIS
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Known secondary structure (DSSP) S


SSTTTTT
B

SSTTTGGGTTS
TTS
TT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GLPEIDVDDWRNNTIYFGYTSDSQVIRWYWRAVRNFSMEERAKLLQFATGTSKLPLEGFAGLRCQNGNQK
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Known secondary structure (DSSP)





T
S

TT
S
TS
S


SS
GGG
B
SSSB

 .........2110.........2120.........2130.........2140....
Sequence FQIHKASGGSSRLPTAHTAFNQLDLPEYDSYEQLVKALLFSLEE
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Known secondary structure (DSSP)




SSS

GGGT


SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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