Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ax1A_

Fold library idPDB HeaderMoleculeTitle
c7ax1A_3.30PDB header: rna binding proteinChain: A: PDB Molecule: ccr4-not transcription complex subunit 6;


Added to library: Sat May 15 09:10:30 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHN
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)



SS















S

SS

GGGTT
TT



SS





GGGGG
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYQEPDG
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)




S






SGGGG
TT


TTS

SS

GGGGG
TT


TT



STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TRRLLNYLLDNLSGTAKRITTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWAL
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)
TT


S











SS



STT

TTTSTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAI
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)
T
SS

TTTTB

B

BS

S



T

B
 .........290.........300.........310.........320.........330.........340.........350
Sequence FFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESTEKQLILVANAHMHWDP
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) BTTTB






S
SS




S


B
S







S
G
 .........360.........370.........380.........390.........400.........410.........420
Sequence EYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) GGTSS






S

TTSSSTT
GGGGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence RYNESLTNFSCNGRITHGFKLQSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVEN
Predicted secondary structure















































SS confidence





































































Known secondary structure (DSSP) TT
TT




S

B

TTTTTSSS
S
SS


BTTT



T
 .........500.........510........
Sequence NISGCPHPLIPSDHFSLFAQLELLLPFL
Predicted secondary structure

















SS confidence



























Known secondary structure (DSSP) T

SSSBTTB
SSB








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D