PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7aqoJ_

Fold library id	PDB Header	Molecule	Title
c7aqoJ_	4.50	PDB header: rna binding protein	Chain: J: PDB Molecule: bj4_g0025130.mrna.1.cds.1;

Links to external resources
Added to library: Sat Dec 5 08:44:41 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G R T Y F E S L C E E E Q S L Q E S Q T H L L N I L D I L S V L A D P D D L L T E S L K K L P D L H R E L I N S S I R L R Y D K Y Q T R E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q L L E D T K T G R D V A A G V Q N P K S I S E Y Y S T F E H L N R D T L R Y I N L L K R L S V D L A K Q V E V S D P S V T V Y E M D K W V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
S
T T T T T
S S
S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P S E K L Q G I L E Q Y C A P D T D I R G V D A Q I K N Y L D Q I K M A R A K F G L E N K Y S L K E R L S T L T K E L N H W R K E W D D I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence M L M F G D D A H S M K K M I Q K I D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	R	T	Y	F	E	S	L	C	E	E	E	Q	S	L	Q	E	S	Q	T	H	L	L	N	I	L	D	I	L	S	V	L	A	D	P	D	D	L	L	T	E	S	L	K	K	L	P	D	L	H	R	E	L	I	N	S	S	I	R	L	R	Y	D	K	Y	Q	T	R	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	L	L	E	D	T	K	T	G	R	D	V	A	A	G	V	Q	N	P	K	S	I	S	E	Y	Y	S	T	F	E	H	L	N	R	D	T	L	R	Y	I	N	L	L	K	R	L	S	V	D	L	A	K	Q	V	E	V	S	D	P	S	V	T	V	Y	E	M	D	K	W	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T							G	G	G		S																									T	T	T	T	T													S	S			S			S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	S	E	K	L	Q	G	I	L	E	Q	Y	C	A	P	D	T	D	I	R	G	V	D	A	Q	I	K	N	Y	L	D	Q	I	K	M	A	R	A	K	F	G	L	E	N	K	Y	S	L	K	E	R	L	S	T	L	T	K	E	L	N	H	W	R	K	E	W	D	D	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											G	G	G		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	M	L	M	F	G	D	D	A	H	S	M	K	K	M	I	Q	K	I	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)